Reprogrammed - OmicsDI

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Organisms

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Homo sapiens (516)
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Tissue

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Mass Spectrometry (53)
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Top-down proteomics (3)
Illumina HiSeq 2000 (2)
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SWATH MS (2)
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ESI (1)
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DiaPASEF (1)
Gel-based experiment (1)

Instrument Platform

Illumina HiSeq 2500 (13)
Illumina HiSeq 2000 (13)
NextSeq 500 (13)
Illumina NovaSeq 6000 (12)
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Publication Date

2014 (159)
2026 (149)
2015 (139)
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2013 (131)
2023 (123)
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2016 (92)
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2011 (85)
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2010 (71)
2018 (63)
2017 (58)
2009 (35)
2008 (17)
2007 (6)
2006 (4)
2003 (1)

CHEBI ID

CHEBI:28842 (5)
CHEBI:16015 (5)
CHEBI:17895 (5)
CHEBI:17295 (5)
CHEBI:28716 (5)
CHEBI:15756 (5)
CHEBI:30805 (4)
CHEBI:37084 (4)
CHEBI:16695 (4)
CHEBI:16708 (4)
CHEBI:16750 (4)
CHEBI:28875 (4)
CHEBI:16335 (4)
CHEBI:17568 (4)
CHEBI:40992 (4)
CHEBI:17509 (4)
CHEBI:7916 (4)
CHEBI:17203 (4)
CHEBI:18183 (4)
CHEBI:18050 (4)
CHEBI:17053 (4)
CHEBI:16027 (4)
CHEBI:15603 (4)
CHEBI:16643 (4)
CHEBI:17596 (4)
CHEBI:17351 (4)
CHEBI:17368 (4)
CHEBI:30813 (3)
CHEBI:19780 (3)
CHEBI:28822 (3)

Metabolite Name

Adenosine (6)
L-Tyrosine (6)
Uracil (5)
L-Proline (5)
Linoleic acid (5)
L-Tryptophan (5)
L-Glutamine (5)
Adenine (5)
Guanosine (5)
L-Leucine (5)
L-Phenylalanine (5)
Inosine (5)
Hypoxanthine (5)
L-Histidine (4)
Indole (4)
Taurine (4)
Spermidine (4)
Xanthine (4)
Creatinine (4)
L-Methionine (4)
Gamma-L-Glutamyl-L-glutamic acid (3)
L-Carnosine (3)
L-Citrulline (3)
N6,N6,N6-Trimethyl-L-lysine (3)
S-Adenosylmethionine (3)
D-Glucose (3)
L-Alanine (3)
Betaine (3)
L-Lysine (3)
L-Aspartic acid (3)

First Public Date

2026 (186)
2014 (185)
2025 (173)
2024 (163)
2023 (146)
2022 (112)
2020 (93)
2021 (86)
2019 (80)
2018 (71)
2017 (63)
2015 (54)
2013 (32)
2016 (29)
2011 (1)

Classification

bacteria (3)

Modification

-17.026549 (1)
15.994915 (1)
22.008724 (1)
42.010565 (1)
57.021464 (1)
73.016378 (1)
Not available (1)

Study status

Recruiting (1)

Study type

Transcription profiling by array (344)
RNA-seq of coding RNA (122)
ChIP-seq (35)
Methylation profiling by array (34)
Methylation profiling by high throughput sequencing (33)
RNA-seq of coding RNA from single cells (13)
Comparative genomic hybridization by array (11)
ChIP-chip by tiling array (9)
Other (8)
RNA-seq of non coding RNA (8)
Unknown experiment type (5)
ATAC-seq (4)
Cell line - High-throughput sequencing (3)
ChIP-chip by array (3)
Genotyping by array (3)
DNA-seq (3)
Baseline (2)
MicroRNA profiling by high throughput sequencing (2)
Bisulfite-seq (2)
MicroRNA profiling by array (2)
RNA-seq of total RNA (2)
Cell line - Single-cell sequencing (1)
Trajectory (1)
Transcription profiling by RT-PCR (1)
RIP-seq (1)
Interventional (1)

Release Date

2025 (278)
2023 (265)
2022 (243)
2021 (236)
2024 (230)
2014 (218)
2020 (194)
2015 (189)
2019 (188)
2016 (176)
2013 (157)
2018 (155)
2012 (131)
2017 (125)
2011 (113)
2010 (79)
2026 (63)
2009 (37)
2008 (20)
2007 (14)
2006 (7)
2003 (2)
2005 (2)
2002 (2)
2004 (1)

Lab affiliation

Department of Infectious Diseases, Molecular Virology, Heidelberg University, Im Neuenheimer Feld 344, Heidelberg, Germany (2)
School of Biomedical Sciences, Faculty of Medicine and Health, UNSW Sydney (2)
The Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287 USA (2)
Aging and Cardiovascular Discovery Center, Lewis Katz School of Medicine, Temple University, Philadelphia, PA 19140, USA (1)
Brain Research Institute, University of Zurich (1)
Cell and Regenerative Biology, University of Wisconsin-Madison (1)
Center for Single-Cell Omics, School of Public Health, Shanghai Jiao Tong University School of Medicine, Shanghai, China (1)
Center for Single-Cell Omics, School of Public Health, Shanghai Jiao Tong University School of Medicine, Shanghai, P. R. China (1)
Center for Technological Development in Health, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil (1)
Centre de Recherche en Cancérologie de Marseille (CRCM) Inserm U1068 - CNRS UMR7258 - Institut Paoli-Calmettes - Aix-Marseille Université Campus de Luminy, Case 915, 163 Avenue de Luminy 13288 Marseille Cedex 9 - FRANCE (1)
Charité Universitätsmedizin Berlin, Germany (1)
Chinese Academy of Agricultural Sciences (1)
Clinical Medical Research Center of Second Clinical Medical College, Jinan University, Shenzhen People's Hospital, No.1017, Dongmen North Road, Luohu District, Shenzhen 518020, China. (1)
Cologne Center for Genomics (CCG), University of Cologne, Faculty of Medicine and University Hospital Cologne (1)
Deparetmento de Bioquímica, Instituto de Química, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil. (1)
Department of Biochemistry and Molecular Biology, Sidney Kimmel Medical College, Thomas Jefferson University, 233 S 10th Street, BLSB 826, Philadelphia, PA, 19104 (1)
Department of Biochemistry and Molecular Biology, The Bio21 Molecular Science & Biotechnology Institute, University of Melbourne, Melbourne, Australia (1)
Department of Biomedical Engineering, University of Wisconsin-Madison (1)
Department of Biomedical Sciences, University of Padova, Italy (1)
Department of Clinical Science, University of Bergen, Norway (1)
Department of Innovative Technologies and Medicine & Odontoiatry, University G. D’Annunzio, Chieti-Pescara, Italy (1)
Department of Integration of Chinese and Western Medicine, Peking University Cancer Hospital and Institute (1)
Department of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory, Stockholm, Sweden (1)
Department of Pathology, Johns Hopkins Medical School, USA (1)
Department of Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry, Am Klopferspitz 18, Martinsried, Germany (1)
Deutsches Herzzentrum der Charité – Medical Heart Center of Charité and German Heart Institute Berlin, Department of Cardiothoracic and Vascular Surgery, 13353 Berlin, Germany (1)
Division of Life Science, Center for Stem Cell Research, Center of Systems Biology and Human Health, State Key Laboratory in Molecular Neuroscience, Molecular Neuroscience Center, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, China. Guangdong Provincial Key Laboratory of Brain Science, Disease and Drug Development, HKUST Shenzhen Research Institute, Shenzhen-Hong Kong Institute of Brain Science, 518057, Shenzhen, Guangdong, China. (1)
Division of Molecular Metabolism, Karolinska Institute, Retziusväg 8, 171 77 Stockholm, Sweden (1)
Division of Physiological Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-17 177 Stockholm, Sweden SciLIfeLab, SE-17 177 Stockholm, Sweden Department of Pharmacological & Technological Chemistry, I.M. Sechenov First Moscow State Medical University, Moscow, 119146, Russia (1)
Fujian medical university union hospital (1)

Location

United States (1)

Keyword

TIL (1)
Tumor infiltrating lymphocyte (1)
Epigenetic (1)
Locally advanced (1)
Metastatic (1)
CRC (1)
Advanced (1)

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Metabolic characterization of directly reprogrammed renal tubular epithelial cells (iRECs)

Fibroblasts can be directly reprogrammed to induced renal tubular epithelial cells (iRECs) using four transcription factors. These engineered cells may be used for disease modeling, cell replacement therapy or drug and toxicity testing. Direct reprogramming induces drastic changes in the transcripti...

2021-08-20 | MTBLS608 | MetaboLights

Reprogrammed Lipid Metabolism in Bladder Cancer with Cisplatin Resistance

Not available

ORGANISM(S): Homo sapiens

ST001120 | MetabolomicsWorkbench

Conditionally reprogrammed (CRC) and feeder free SMAD inhibited (SMADi) expanded human nasal epithelial cells label-free LC-MS/MS

Discovery of therapies that are able to correct defective CFTR requires patient derived in vitro pre-clinical cell models to be developed. Two main approaches exist to expand bronchial and nasal cultures, such as conditionally reprogrammed cells (CRC) and feeder free dual SMAD inhibition (SMADi) to ...

ORGANISM(S): Homo sapiens (Human)

2021-12-05 | PXD018386 | Pride

Epigenetic profiling of hepatocyte, reprogrammed hepatocyte, and biliary cells

PRJNA659644 | ENA

Metabolomics and Lipidomics Screening Reveal Reprogrammed Signaling Pathways toward Cancer Development in Non-Alcoholic Steatohepatitis

Non-alcoholic fatty liver disease is now considered the most common form of chronic liver disease. It is a complex metabolic disease that silently progresses into non-alcoholic steatohepatitis (NASH). In fact, NASH is the tipping point for pericellular fibrosis, cirrhosis and hepatocellular carcinom...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2021-08-19 | MSV000088003 | MassIVE

Global RNA expression of fibromodulin reprogrammed human BJ fibroblasts

PRJNA413984 | ENA

RNA Sequencing for reprogrammed beta cells

PRJNA417706 | ENA

DNA methylation programming and reprogramming in primate embryonic stem cells

DNA methylation is an important epigenetic mechanism, affecting normal development and playing a key role in reprogramming epigenomes during stem cell derivation. Here we report on DNA methylation patterns in native monkey embryonic stem (ES) cells, fibroblasts and ES cells generated through somatic...

ORGANISM(S): Macaca mulatta

2009-09-10 | E-GEOD-17981 | biostudies-arrayexpress

Transcriptional profiling of hepatocyte, reprogrammed hepatocyte, and biliary cells [human]

PRJNA662340 | ENA

RNA-seq of human dermal fibroblasts reprogrammed into cardiomyocytes

PRJNA759230 | ENA

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