Reptiles - OmicsDI

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Unknown (1817)
Genomics (228)
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Other (1)

Organisms

Pleurodeles waltl (9)
Mus musculus (7)
Gallus gallus (5)
Pantherophis guttatus (4)
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Pogona vitticeps (3)
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Trachemys scripta elegans (2)
Capra aegagrus (2)
Eublepharis macularius (2)
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Entamoeba invadens (1)
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Rhyticeros narcondami (1)
Ophiothrix spiculata (1)

Organisms

Pleurodeles waltl (9)
gut metagenome (6)
Mus musculus (5)
Ornithorhynchus anatinus (4)
Gallus gallus (4)
Salmonella enterica (3)
Pantherophis guttatus (3)
Eublepharis macularius (3)
Python regius (2)
Pogona vitticeps (2)
Entamoeba invadens (2)
Pelodiscus sinensis (2)
Bombyx mori (2)
Homo sapiens (2)
Salmonella enterica subsp. arizonae serovar 62:z4,z23:- (1)
Campylobacter fetus subsp. testudinum Sp3 (1)
Enterococcus lacertideformus (1)
Aetokthonos hydrillicola JST01 (1)
Borrelia (1)
Campylobacter fetus subsp. testudinum 03-427 (1)
Mycobacterium (1)
Salmonella (1)
Edwardsiella tarda (1)
Coxiella burnetii (1)
Salmonella enterica subsp. diarizonae (1)
Salmonella enterica subsp. enterica (1)
Dopasia gracilis (1)
Basidiobolus (1)
Tretioscincus oriximinensis (1)
Calyptommatus sinebrachiatus (1)

Repository

ENA (227)
geo (38)
biostudies-arrayexpress (10)
pride (5)
iProX (2)
MetaboLights (2)

Tissue

Venom (2)
Blood serum (1)
Submandibular gland (1)

Technology Type

Mass Spectrometry (5)
Mass spectrometry (2)
Shotgun proteomics (2)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Gel-based experiment (1)
Mass spectrometry imaging (1)

Instrument Platform

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Illumina HiSeq 2000 (1)

Publication Date

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2015 (1)

CHEBI ID

CHEBI:90041 (2)
CHEBI:50211 (2)
CHEBI:6257 (2)
CHEBI:8638 (2)
CHEBI:72736 (2)
CHEBI:70958 (2)
CHEBI:16390 (2)
CHEBI:70744 (2)
CHEBI:16974 (2)
CHEBI:17650 (2)
CHEBI:19289 (2)
CHEBI:16040 (2)
CHEBI:73723 (2)
CHEBI:16296 (2)
CHEBI:41321 (2)
CHEBI:28158 (2)
CHEBI:52392 (2)
CHEBI:42017 (2)
CHEBI:72663 (2)
CHEBI:53486 (2)
CHEBI:53487 (2)
CHEBI:48131 (2)
CHEBI:74099 (2)
CHEBI:91218 (2)
CHEBI:15891 (2)
CHEBI:16525 (2)
CHEBI:168877 (2)
CHEBI:7466 (2)
CHEBI:138785 (2)
CHEBI:16235 (2)

Metabolite Name

Guanine (2)
Cytosine (2)
Isoproterenol (2)
Uracil (2)
Palmitoleic acid (2)
Hypoxanthine (2)
Gamma-Linolenic acid ethyl ester (1)
N-Cyclohexyl-N-methylcyclohexanamine (1)
Beta hydroxybutyrate (1)
11-alpha-Hydroxy-17-methyltestosterone (1)
L-(-)Histidinol (dihydrochloride) (1)
6alpha-Naloxol (1)
Gamma-Valerolactam (1)
Nitrosoheptamethyleneimine (1)
N-(1,3-benzodioxol-5-ylmethyl)-6-morpholinonicotinamide (1)
Dl-Dihydrosphingosine (1)
17alpha-Methyl-androstan-3-hydroxyimine-17beta-ol (1)
6-Ketoprostaglandin F1alpha (1)
Phenazine-2-carboxylic acid (1)
(S)-Nicotine (1)
Carbamoyl-DL-Aspartic acid (1)
4-chloro-1H-indazol-3-amine (1)
Lysopc 15:0 (1)
[1,1'-biphenyl]-2,2'-dicarboxylic acid (1)
6-Methoxyquinoline N-oxide (1)
Gamma-Aminobutyric Acid (1)
Beta-Pseudouridine (1)
Methyl 1-isopropyl-1H-1,2,3-benzotriazole-5-carboxylate (1)
Dihomo-gamma-linolenic acid ethyl ester (1)
2-methyl-1,2-dihydrophthalazin-1-one (1)

First Public Date

2025 (34)
2026 (29)
2013 (29)
2022 (25)
2024 (18)
2019 (15)
2021 (14)
2018 (13)
2023 (12)
2020 (10)
2015 (8)
2017 (7)
2014 (7)
2016 (5)
2012 (1)

Classification

bacteria (14)

Study type

Transcription profiling by array (7)
RNA-seq of coding RNA (3)

Release Date

2023 (193)
2025 (191)
2022 (181)
2020 (168)
2021 (166)
2024 (131)
2019 (127)
2018 (114)
2017 (86)
2016 (80)
2015 (76)
2014 (68)
2013 (46)
2012 (42)
2011 (25)
2026 (25)
2010 (24)
2008 (23)
2009 (22)
2007 (14)
2006 (8)
2005 (5)
2004 (3)
2003 (3)
2001 (2)
1998 (2)
1999 (1)
1997 (1)

Lab affiliation

Evolutionary and translational venomics Lab, Instituto de Biomedicina de Valencia, CSIC (1)
Forschungszentrum Juelich ZEA-3 Analytics Wilhelm-Johnen-Str D-52425 Juelich Germany (1)
MOE Key Laboratory of Biosystems Homeostasis & Protection, State Conservation Centre for Gene Resources of Endangered Wildlife, College of Life Sciences, Zhejiang University, Hangzhou 310058, P. R. China (1)
University of Colorado School of Medicine, Department of Biochemistry & Molecular Genetics, Aurora, CO, USA (1)
iNANO and Department of Molecular Biology and Genetics, Aarhus University, Denmark (1)

Tags

pathogen (14)
pathogen:bacterium (14)

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Prey of squamate reptiles

Diet DNA metabarcoding of squamate reptiles

PRJNA801474 | ENA

Amphibians and Reptiles of Myanmar

Preserving Genomic Biodiversity of the Amphibians and Reptiles of Myanmar

PRJNA384814 | ENA

Challenges in microbiological identification of aerobic bacteria isolated from the skin of reptiles.

Not available

S-EPMC7571677 | biostudies-literature

Candidate genes underlying hypomelanistic morphs in squamate reptiles

PRJNA1223835 | ENA

Candidate genes underlying hypomelanistic morphs in squamate reptiles

PRJNA1225254 | ENA

Conserved and lineage-specific mechanisms drive chromatophore differentiation in reptiles

PRJNA1297766 | ENA

Candidate genes underlying hypomelanistic morphs in squamate reptiles

Reptiles exhibit a broad variety of adaptive colours and colours patterns but little is known of the mechanisms responsible for these traits. We focus here on the Hypomelanistic traits of 1 corn snake color morph and 3 leopard gecko color morphs. We use mapping-by-sequencing and and differential exp...

ORGANISM(S): Pantherophis guttatus

2025-10-23 | GSE289621 | GEO

Candidate genes underlying hypomelanistic morphs in squamate reptiles

ORGANISM(S): Eublepharis macularius

2025-10-23 | GSE289890 | GEO

Conserved and lineage-specific mechanisms drive chromatophore differentiation in reptiles

We employed single-cell RNA sequencing using the 10X Genomics platform to study chromatophore development in reptilian embryonic skin. Pigment cells have been well characterized in fish, but little is known about their development in reptiles. We analyzed dorsal skin from corn snakes and bearded dra...

ORGANISM(S): Pogona vitticeps Pantherophis guttatus

2026-05-28 | GSE303854 | GEO

Quantico Amphibians and Reptiles

Barcoding herpetofauna of Quantico, VA and nieghboring areas

PRJNA552856 | ENA

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