Rex - OmicsDI

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Unknown (864)
Genomics (265)
Proteomics (224)
Transcriptomics (193)
Metabolomics (27)
Genomic (10)
Other (10)
Clinical (5)
Models (1)
Methylation profiling (1)

Organisms

Homo sapiens (146)
Caenorhabditis elegans (34)
Mus musculus (31)
Rattus norvegicus (5)
synthetic construct (3)
Streptococcus pneumoniae D39 (3)
Enterococcus faecalis (2)
Saccharomyces cerevisiae (2)
Caldicellulosiruptor saccharolyticus (2)
Caldicellulosiruptor bescii DSM 6725 (2)
Oryctolagus cuniculus (2)
Dinoroseobacter shibae (1)
Ribes nigrum (1)
Enterococcus faecalis OG1RF (1)
Rubus idaeus (1)
Streptococcus agalactiae (1)
Vitis vinifera (1)
Aedes aegypti (1)
Staphylococcus aureus (1)
Glycine max (1)
Sus scrofa (1)
Stenocranius gregalis (1)
Alexandromys oeconomus (1)
Microgale thomasi (1)
Paraechinus hypomelas (1)
Sylvilagus brasiliensis (1)
Galeopterus variegatus (1)
Clethrionomys gapperi (1)
Micaelamys namaquensis (1)
Crocidura cyanea (1)

Organisms

Homo sapiens (101)
Caenorhabditis elegans (23)
Oryctolagus cuniculus (10)
Mus musculus (6)
Rhinolophus rex (4)
gut metagenome (4)
Caldicellulosiruptor bescii DSM 6725 (2)
Phaeocystis rex (2)
Streptococcus pneumoniae D39 (2)
Caldicellulosiruptor saccharolyticus (1)
Clytoceyx rex (1)
Balaeniceps rex (1)
Pipa carvalhoi (1)
Rhododendron rex (1)
Pedicularis rex (1)
Eubacterium limosum (1)
Enterococcus faecalis OG1RF (1)
Lacticaseibacillus paracasei (1)
Phaseolus vulgaris (1)
Caldicellulosiruptor bescii (1)
Enterococcus faecalis (1)
Aedes aegypti (1)
Drosophila melanogaster (1)
Felis catus (1)
Staphylococcus aureus (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Danio rerio (1)
Rattus norvegicus (1)

Repository

ENA (216)
biostudies-arrayexpress (163)
pride (162)
geo (75)
MassIVE (56)
MetaboLights (27)
dbGaP (10)
EGA (9)
iProX (6)
ExpressionAtlas (3)
GPMDB (3)
BioModels (1)

Tissue

Cell culture (73)
Epithelial cell (18)
Permanent cell line cell (16)
Kidney (7)
Early embryonic cell (6)
Flp-In-T-REx cell (5)
HEK-293T cell (5)
Kidney cell (5)
Jump-In-T-REx HEK293 cell (4)
Blood (2)
Blood cell (2)
Embryonic stem cell (2)
HeLa cell (2)
Monocyte (2)
Reticulocyte (2)
1321-N1 cell (1)
Blood plasma (1)
Bone cell (1)
Brain (1)
Bronchoalveolar lavage (1)
Cervical cancer cell line (1)
Diploid cell (1)
HCT-116 cell (1)
HEK-293 cell (1)
HuH-7 cell (1)
LS-180 cell (1)
MDA-MB-468 cell (1)
SK-MEL-28 cell (1)
T-REx 293 cell (1)
U2-OS cell (1)

Disease

Disease free (8)
Not Available (3)
Colon cancer (3)
Colorectal cancer (2)
Cervix carcinoma (2)
Malaria (2)
Ovarian cancer (1)
Liver Metastases of Colorectal Cancer (1)
Colonic Polyps (1)
Colonic Neoplasms (1)
Acute T cell leukemia (1)
Amyotrophic lateral sclerosis (1)
Anemia (1)
Bone osteosarcoma (1)
Breast cancer (1)
Facioscapulohumeral muscular dystrophy (1)
Huntington Disease (1)
Hypochromic anemia (1)
Inflammation (1)
Leptospirosis (1)
Mitochondrial metabolism disease (1)
Osteosarcoma (1)
Parkinson's disease (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (162)
Affinity purification coupled with mass spectrometry proteomics (70)
Shotgun proteomics (56)
Bottom-up proteomics (38)
Data-dependent acquisition (22)
Mass spectrometry (20)
Data-independent acquisition (14)
Gel-based experiment (10)
Mass spectrometry assay (6)
SWATH MS (5)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
SRM/MRM (3)
Top-down proteomics (3)
Illumina HiSeq 2500, ILLUMINA (2)
NMR spectroscopy assay (1)
Affinity proteomics (1)

Instrument Platform

Q Exactive HF (15)
Liquid Chromatography MS - positive - reverse phase (12)
LTQ Orbitrap Elite (10)
Illumina NovaSeq 6000 (9)
Liquid Chromatography MS - negative - reverse phase (8)
Illumina HiSeq 4000 (7)
LTQ Orbitrap Velos (5)
Orbitrap Fusion Lumos (5)
LTQ Velos (4)
Orbitrap Fusion (4)
TripleTOF 5600 (4)
TripleTOF 6600 (4)
Instrument (3)
Q Exactive HF (Thermo Scientific) (3)
Illumina Genome Analyzer II (2)
Illumina HiSeq 2500 (2)
Q Exactive (2)
Q-Exactive HF (2)
TimsTOF Pro (2)
MicrOTOF-Q II ESI-Qq-TOF (Bruker) (2)
Liquid Chromatography MS - negative (2)
ArrayWoRx Biochip Reader [Applied Precision] (1)
Illumina Genome Analyzer IIx (1)
Illumina MiSeq (1)
NextSeq 550 (1)
AB 5500xl Genetic Analyzer (1)
Orbitrap Exploris 480 (1)
Q Exactive HF (ThermoScientific) (1)
Q-Exactive HF (Thermo Scientific) (1)
Q-Exactive HF (ThermoScientific) (1)

Publication Date

2025 (45)
2022 (42)
2026 (39)
2013 (36)
2024 (36)
2023 (33)
2018 (31)
2021 (30)
2014 (26)
2016 (20)
2011 (19)
2020 (18)
2019 (17)
2017 (16)
2015 (16)
2012 (16)
2010 (16)
2009 (12)
2008 (10)
2007 (4)
2005 (2)
2006 (1)
2004 (1)

CHEBI ID

CHEBI:30769 (7)
CHEBI:18186 (6)
CHEBI:16811 (6)
CHEBI:28044 (6)
CHEBI:17822 (5)
CHEBI:27570 (5)
CHEBI:16704 (5)
CHEBI:15891 (5)
CHEBI:15428 (5)
CHEBI:16027 (5)
CHEBI:16335 (5)
CHEBI:27897 (5)
CHEBI:17126 (4)
CHEBI:22660 (4)
CHEBI:28300 (4)
CHEBI:27266 (4)
CHEBI:29016 (4)
CHEBI:18237 (4)
CHEBI:16856 (4)
CHEBI:16865 (4)
CHEBI:17015 (4)
CHEBI:16750 (4)
CHEBI:17858 (4)
CHEBI:22653 (4)
CHEBI:16449 (4)
CHEBI:28683 (4)
CHEBI:16919 (4)
CHEBI:16765 (3)
CHEBI:30816 (3)
CHEBI:26271 (3)

Metabolite Name

Tyrosine (5)
Leucine (3)
Glycine (3)
Valine (3)
Taurine (3)
Glutathione (3)
Oleamide (3)
Adenosine (3)
Glutamine (3)
Adenine (3)
Uridine (3)
Tryptophan (3)
L-Phenylalanine (3)
Styrenes (2)
Lysophosphatidilcholine (2)
3-Benzyl-2-methyl-2-tridecanamine (2)
Oroxindin (2)
Heptadecasphinganine (2)
LPE 17:1 (2)
Narcissin (2)
Creatine phosphate (2)
Hexadecylamine (2)
Phytosphingosine (2)
Cinnamic acid (2)
Cystathionine (2)
Glutathione oxidized (2)
Histidine (2)
3-Hexenyl salicylic acid (2)
Indoleacetic acid (2)
L-Cystine (2)

First Public Date

2014 (39)
2024 (26)
2018 (21)
2022 (19)
2025 (16)
2021 (16)
2026 (15)
2023 (15)
2019 (11)
2016 (11)
2017 (8)
2020 (7)
2015 (7)
2013 (5)

Study status

Completed (2)
Terminated (1)
Active, not recruiting (1)
Not provided (1)

Lab affiliation

UMR 7367 CNRS-UL IMoPA Biopôle de l'Université de Lorraine Campus Brabois-Santé 9 avenue de la forêt de Haye 54505 Vandoeuvre-les-Nancy FRANCE (8)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (5)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (4)
Signal Transduction (3)
Univ. Lille, Inserm, CHU Lille, U1192 - Protéomique Réponse Inflammatoire Spectrométrie de Masse - PRISM, F-59000 Lille, France (3)
CEA-Marcoule, DSV-iBEB-SBTN-LBSP (2)
CRCM, Institut Paoli-Calmettes, Aix-Marseille Université, Inserm, CNRS, 13009 Marseille, France (2)
DNRF Center for Gene Expression Department of Cellular and Molecular Medicine Blegdamsvej 3B University of Copenhagen 2200 Copenhagen N, Denmark (2)
Department of Cell Biology, Harvard Medical School, 240 Longwood Ave., Boston, MA 02115 (2)
Dept. of Molecular Biosciences, University of Texas at Austin, Texas 78712 USA (2)
Institute for Genetics, University of Cologne, 50674 Cologne, Germany (2)
Institute of Biochemistry (2)
Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland (2)
MRC Laboratory of Molecular Biology Francis Crick Avenue Cambridge Biomedical Campus CB2 0QH Cambridge UK (2)
Max Perutz Labs, Department of Microbiology, Immunobiology and Genetics, Center for Molecular Biology, University of Vienna (2)
Max Perutz Labs, Medical University of Vienna, Dr. Bohr-Gasse 9/2, 1030 Vienna, Austria (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
Redox Metabolism, Institute for Biochemistry, University of Cologne (2)
School of Pharmacy, University of Wisconsin-Madison (2)
University of Dundee (2)
1. CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria 2. Center for Physiology and Pharmacology, Medical University of Vienna, Vienna, Austria (1)
Advanced Research Centre (ARC) College of Medical, Veterinary and Life Sciences University of Glasgow, Glasgow, UK. (1)
Biological Mass Spectrometry Lab,Department of Translational Medicine (DiMeT),Center for Translational Research on Autoimmune & Allergic Diseases - CAAD, University of Piemonte Orientale, Novara (NO),Italy. (1)
Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (1)
Biozentrum, University of Basel (1)
CEITEC, Masaryk University Molecular medicine department, RNA and immunity group (1)
CEITEC—Central European Institute of Technology, Masaryk University, Brno, Czech Republic (1)
Cambridge Institute for Medical Research, University of Cambridge (1)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (1)
Cell and Chemical Biology Leiden University Medical Center The Netherlands (1)

Tags

xref:PubMed:19270160 (5)
pathogen (5)
pathogen:bacterium (5)
xref:PubMed:36331876 (4)
xref:PubMed:24986859 (3)
xref:PubMed:26030525 (3)
xref:PubMed:31491396 (3)
xref:PubMed:21363964 (3)
xref:PubMed:37488172 (2)
xref:PubMed:35017528 (2)
xref:PubMed:34060910 (2)
xref:PubMed:38266641 (2)
xref:PubMed:38113271 (2)
xref:PubMed:40287942 (2)
xref:PubMed:40594963 (2)
xref:PubMed:37679383 (2)
xref:PubMed:42031737 (2)
xref:PubMed:24043781 (2)
xref:PubMed:24726324 (2)
xref:PubMed:38412299 (2)
xref:PubMed:23583182 (2)
xref:PubMed:35216000 (2)
xref:ArrayExpress:E-MTAB-4733 (1)
xref:ArrayExpress:E-MTAB-4732 (1)
xref:PubMed:33481774 (1)
xref:PubMed:35835219 (1)
xref:PubMed:35051593 (1)
xref:PubMed:29898919 (1)
xref:PubMed:30395194 (1)
xref:PubMed:38766755 (1)

Keyword

C-REX (2)
Colon cancer, lymph node, extent of bowel resection (1)
Adaptive anastomoses (1)
Post-Market (1)
Adaptive anastomosis (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Classification

bacteria (5)

Modification

Not available (3)

Study type

Transcription profiling by array (65)
RNA-seq of coding RNA (37)
ChIP-seq (20)
Other (14)
ChIP-chip by tiling array (7)
Interventional (4)
Methylation profiling by high throughput sequencing (3)
RNA-seq of total RNA (3)
RNA-seq of non coding RNA (3)
Cell line - High-throughput sequencing (2)
Methylation profiling by array (2)
Trajectory (1)
RNAi profiling by array (1)
Genotyping by array (1)
CLIP-seq (1)
Comparative genomic hybridization by array (1)
Ribo-seq (1)
RNA-seq of coding RNA from single cells (1)
Observational (1)

Release Date

2022 (99)
2025 (89)
2021 (82)
2023 (76)
2020 (75)
2019 (62)
2018 (61)
2013 (59)
2016 (54)
2014 (52)
2024 (51)
2017 (48)
2015 (47)
2012 (40)
2010 (29)
2011 (28)
2008 (18)
2026 (11)
2007 (10)
2009 (9)
2006 (5)
2003 (5)
2000 (4)
1999 (3)
1998 (3)
2005 (2)
2004 (2)
2001 (2)
1997 (1)

Location

Japan (2)
China (2)
Lithuania (1)
Taiwan (1)
United Kingdom (1)
Russia (1)
South Korea (1)
Germany (1)
Sweden (1)

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Balaeniceps rex

Balaeniceps rex

PRJNA920198 | ENA

Clytoceyx rex

PRJNA921082 | ENA

Rhinolophus rex isolate:SY-2024

Rhinolophus rex isolate:SY-2024 Genome sequencing

PRJNA1155404 | ENA

Rhinolophus rex isolate:RreECNU

Rhinolophus rex (isolate: RreECNU) genome sequencing and assembly

PRJNA1004762 | ENA

Phaeocystis rex

Phaeocystis rex overview

PRJNA535357 | ENA

Rhinolophus rex

Rhinolophus rex overview

PRJNA436433 | ENA

Results of the first interim analysis of the RAPPER II trial in patients with spinal cord injury: ambulation and functional exercise programs in the REX powered walking aid.

Not available

S-EPMC5477376 | biostudies-literature

SNP microarray of T-REx-293-based clones overexpressing the DNA cytosine deaminase APOBEC3B

A conditional and isogenic system for APOBEC3B (A3B) induction in T-REx-293 cells. Cells were engineered to express doxycycline-inducible A3B-eGFP or eGFP constructs and subjected to 10 rounds of A3B-eGFP exposure causing 80-90% cell death. Control pools (eGFP) were subjected to parallel rounds of n...

ORGANISM(S): Homo sapiens

2016-06-30 | E-GEOD-78710 | biostudies-arrayexpress

Homo sapiens strain:T-REx-293

Homo sapiens strain:T-REx-293 Raw sequence reads

PRJNA312357 | ENA

Rhinolophus rex

Rhinolophus rex Raw sequence reads

PRJNA369302 | ENA

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