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Transcriptomics[E-MTAB-533] GENCODE Targeted Sequencing Batch III
As part of the RNASeq Genome Annotation Assessment Project (RGASP) selected novel gene model predictions were analysed with RT-PCR-Seq. ArrayExpress Release Date: 2011-03-01 Publication Title: GENCODE: producing a reference annotation for ENCODE Publication Author List: Harrow J, Denoeud F, Frankish...
ORGANISM(S): Homo sapiens Caenorhabditis elegans 
2011-07-14 | GSE30612 | GEO
Transcriptomics[E-MTAB-935] GENCODE PCR-Seq Batch VII
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is batch VII, which targets annotations from Gencode 8 (Mar...
ORGANISM(S): Homo sapiens 
2012-04-25 | GSE37592 | GEO
Transcriptomics[E-MTAB-737] GENCODE PCR-Seq Batch V
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is batch V, based on annotations from Gencode 6 (November20...
ORGANISM(S): Homo sapiens 
2012-01-04 | GSE34820 | GEO
Transcriptomics[E-MTAB-612] GENCODE PCR-Seq Batch I
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is the RNASeq part of batch I, based on annotation from Jul...
ORGANISM(S): Homo sapiens 
2011-07-14 | GSE30619 | GEO
TranscriptomicsValidation of a subset of copy number variants from GSE24424 by aCGH
This dataset was used to validate CNV predictions from GSE24424. We designed a custom CGH array to interrogate a total of 4,420 individual CNVs and their flanks predicted in 17 individuals. On the basis of a test that compares signals of probes located within to those mapping outside of CNVs (two-ta...
ORGANISM(S): Mus musculus 
2010-12-31 | E-GEOD-24640 | biostudies-arrayexpress
Transcriptomics[E-MTAB-831] GENCODE PCR-Seq Batch VI
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is batch VI, which targets annotations from Gencode 6 (Nove...
ORGANISM(S): Homo sapiens 
2012-01-04 | GSE34821 | GEO
TranscriptomicsGENCODE PCR-Seq Batch V
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is batch V, based on annotations from Gencode 6 (November20...
ORGANISM(S): Homo sapiens 
2011-08-22 | E-MTAB-737 | biostudies-arrayexpress
TranscriptomicsGENCODE PCR-Seq Batch VII
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is batch VII, which targets annotations from Gencode 8 (Mar...
ORGANISM(S): Homo sapiens 
2012-02-01 | E-MTAB-935 | biostudies-arrayexpress
TranscriptomicsGENCODE PCR-Seq Batch I
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is the RNASeq part of batch I, based on annotation from Jul...
ORGANISM(S): Homo sapiens 
2011-05-01 | E-MTAB-612 | biostudies-arrayexpress
TranscriptomicsGENCODE PCR-Seq Batch VI
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is batch VI, which targets annotations from Gencode 6 (Nove...
ORGANISM(S): Homo sapiens 
2011-11-25 | E-MTAB-831 | biostudies-arrayexpress
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