Ribeiro M M - OmicsDI

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Unknown (2797)
Proteomics (142)
Transcriptomics (50)
Genomics (8)
Metabolomics (3)

Organisms

Homo sapiens (76)
Mus musculus (28)
Rattus norvegicus (8)
Zea mays (7)
Carica papaya (5)
Saccharum hybrid cultivar SP80-3280 (4)
Arabidopsis thaliana (3)
Anopheles gambiae str. PEST (3)
Plasmodium berghei ANKA (3)
Sus scrofa domesticus (3)
Anopheles gambiae (2)
Aedes aegypti (2)
Amblyomma sculptum (2)
Cedrela fissilis (2)
Ixodes ricinus (2)
Leishmania tarentolae (2)
Passiflora edulis (2)
Portulaca oleracea (2)
Saccharomyces cerevisiae (2)
Xenopsylla cheopis (2)
Enterococcus faecalis V583 (1)
Medicago truncatula (1)
Listeria monocytogenes (1)
Citrus sinensis (1)
Plasmodium falciparum 3D7 (1)
Mycobacterium tuberculosis (1)
Architeuthis dux (1)
Cricetulus griseus (1)
Gluconacetobacter diazotrophicus PA1 5 (1)
Leishmania major strain Friedlin (1)

Organisms

Homo sapiens (4)
Ixodes ricinus (1)

Repository

pride (135)
biostudies-arrayexpress (51)
ENA (7)
MassIVE (3)
MetaboLights (3)
PanoramaPublic (3)
EGA (1)

Tissue

Plant cell (24)
Cell culture (22)
Saliva (11)
Root (10)
Leaf (7)
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B cell (4)
Blood (4)
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Heart (4)
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Shoot (3)
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Callus culture (2)
Culture fluid (2)
Extracellular vesicle (2)
Hemolymph (2)
Kidney (2)
Lung (2)
Stomach (2)
Acute myeloid leukemia cell line (1)
Astrocyte (1)
Astrocyte of the cerebral cortex (1)
Blood cell (1)
T cell (1)

Disease

Breast cancer (5)
Oral squamous cell carcinoma (3)
Schizophrenia (3)
Disease free (2)
Uninfected 11dpi (1)
Acute leukemia (1)
Acute myeloid leukemia (1)
Amyotrophic lateral sclerosis (1)
COVID-19 (1)
Cardiovascular system disease (1)
Chronic lymphocytic leukemia (1)
Diabetes (1)
Gastric adenocarcinoma (1)
Head and neck cancer (1)
Heart failure (1)
Inflammatory bowel disease (1)
Lymphoma (1)
Malaria (1)
Multiple myeloma (1)
Obesity (1)
Osteoporosis (1)
Pancreatic ductal adenocarcinoma (1)
Peripheral primitive neuroectodermal tumor (1)
Plasmodium falciparum malaria (1)
Retinopathy (1)
Trypanosomiasis (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (135)
Shotgun proteomics (83)
Bottom-up proteomics (34)
HDMSE (27)
Data-independent acquisition (12)
Data-dependent acquisition (10)
Affinity purification coupled with mass spectrometry proteomics (8)
SWATH MS (4)
Mass spectrometry (3)
MSE (3)
DiaPASEF (2)
Gel-based experiment (2)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

NextSeq 500 (2)
LTQ Orbitrap Elite (2)
Hamamatsu Nanozoomer S60 (1)
AB SOLiD System 3.0 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap (1)
Liquid Chromatography MS - positive - reverse phase (1)
MS Imaging - (1)
Q Exactive (1)

Publication Date

2022 (29)
2025 (27)
2023 (22)
2021 (19)
2026 (13)
2010 (12)
2024 (10)
2019 (9)
2018 (8)
2020 (8)
2014 (7)
2016 (6)
2008 (6)
2013 (5)
2015 (4)
2012 (4)
2011 (3)
2017 (2)

CHEBI ID

CHEBI:116314 (1)
CHEBI:132948 (1)
CHEBI:138126 (1)
CHEBI:138368 (1)
CHEBI:139305 (1)
CHEBI:142245 (1)
CHEBI:15318 (1)
CHEBI:15351 (1)
CHEBI:15354 (1)
CHEBI:15355 (1)
CHEBI:15428 (1)
CHEBI:15611 (1)
CHEBI:15676 (1)
CHEBI:15698 (1)
CHEBI:15724 (1)
CHEBI:15727 (1)
CHEBI:15760 (1)
CHEBI:15891 (1)
CHEBI:15963 (1)
CHEBI:16010 (1)
CHEBI:16020 (1)
CHEBI:16040 (1)
CHEBI:16113 (1)
CHEBI:16235 (1)
CHEBI:16238 (1)
CHEBI:16335 (1)
CHEBI:16393 (1)
CHEBI:16410 (1)
CHEBI:16436 (1)
CHEBI:16449 (1)

Metabolite Name

Adenine (2)
Alanine (2)
Cholesterol (2)
Creatinine (2)
Glutamine (2)
Glycine (2)
Isoleucine (2)
Leucine (2)
Lysine (2)
Methionine (2)
Ornithine (2)
Phenylalanine (2)
Proline (2)
Putrescine (2)
Sarcosine (2)
Serine (2)
Taurine (2)
Tryptophan (2)
Tyrosine (2)
Valine (2)
1-kestose (1)
1-methyladenine (1)
1-methyladenosine (1)
12,13-DiHOME (1)
13-(Z)-Docosenamide (1)
2'-O-methyluridine (1)
2'-deoxyadenosine (1)
2'-deoxycytidine (1)
2'-deoxyguanosine (1)
2'-deoxyinosine (1)

First Public Date

2015 (4)
2025 (1)
2024 (1)
2013 (1)

Modification

0.984 (1)
15.99491 (1)
43.00581 (1)
57.02146 (1)

Study type

Transcription profiling by array (31)
Genotyping by array (5)
Comparative genomic hybridization by array (4)
ChIP-chip by array (2)
RNA-seq of coding RNA (2)
Human - Methylation microarray (1)
Human - Single-cell sequencing (1)
Other (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (368)
2022 (367)
2023 (319)
2024 (307)
2021 (288)
2020 (240)
2018 (165)
2019 (150)
2017 (109)
2015 (101)
2016 (96)
2014 (74)
2026 (54)
2013 (46)
2012 (41)
2010 (32)
2011 (31)
2009 (26)
2008 (12)
2007 (6)
2005 (4)
2006 (3)
2003 (3)
2001 (3)
2002 (2)
2004 (1)

Lab affiliation

Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (8)
AstraZeneca (3)
Laboratory of Malaria and Vector Research, NIAID, NIH (3)
1. Laboratório de Neurofisiologia, Departamento de Ciências Fisiológicas, Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro (UERJ), Av. Prof. Manuel de Abreu 444, 5 andar – Vila Isabel, Rio de Janeiro, RJ, 20550-170, Brazil. (2)
Genetics Department, Federal University of Parana, Curitiba, Brazil (2)
Laboratório de Biotecnologia (Unidade de Biologia Integrativa, Setor de Genômica e Proteômica), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, 2000, Campos dos Goytacazes 28013-602, Rio de Janeiro, Brazil (2)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia Universidade Estadual do Norte Fluminense Darcy Ribeiro Av. Alberto Lamego 2000 Campos dos Goytacazes-RJ, Brazil 28013-602 (2)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (2)
Molecular Parasitology and Entomology Unit,Laboratory of Malaria and Vector Research, National Institutes of Health. USA. (2)
Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Centro de Biociências e Biotecnologia, Laboratório de Química e Função de Proteínas e Peptídeos, Prédio P5, Sala 228, Bairro Parque Califórnia, Campos dos Goytacazes, RS - CEP: 28013-602 (2)
1 - i3S – Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Rua Alfredo Allen 208, 4200-135 Porto, Portugal; 2 - Cancer Drug Resistance Group, IPATIMUP – Institute of Molecular Pathology and Immunology, University of Porto, Rua Júlio Amaral de Carvalho 45, 4200-135 Porto, Portugal; 3 - Department of Biological Sciences, FFUP – Faculty of Pharmacy, University of Porto, Rua de Jorge Viterbo Ferreira 228, 4050-313 Porto, Portugal (1)
1) Instituto de Investigação e Inovação em Saúde (i3S), Universidade do Porto, Porto, Portugal 2) Instituto de Engenharia Biomédica (INEB), Universidade do Porto, Porto, Portugal 3) Instituto de Ciências Biomédicas Abel Salazar (ICBAS), Universidade do Porto, Porto, Portugal (1)
Angiogenesis Laboratory, Centro Cardiovascular da Universidade de Lisboa (CCUL@RISE), Lisbon School of Medicine of the Universidade de Lisboa; Lisbon, 1649-028, Portugal (1)
Bauru School of Dentistry, University of São Paulo, Bauru, Brazil (1)
Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany (1)
Biomolecular Mass Spectrometry and Proteomics Bijvoet Center for Biomolecular Reseach and Utrecht Institute of Pharmaceutical Sciences Utrecht University Padualaan 8, 3584 CH Utrecht, The Netherland (1)
Brazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Sao Paulo, Brazil. (1)
CBMA - Univeristy of Minho (1)
CIISA - Centro de Investigação Interdisciplinar em Sanidade Animal, Faculdade de Medicina Veterinária, Universidade de Lisboa, Alto da Ajuda, 1300-477 Lisboa, Portugal. (1)
Cambridge Institute for Medical Research, University of Cambridge, UK (1)
Center FOr Cancer Research Development, Proteomics Core Facility, Rhode Island Hospital, Providence, RI, USA (1)
Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark. The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark. (1)
Center for Neuroscience and Cell Biology (1)
Center for Neuroscience and Cell Biology of the University of Coimbra, Portugal (1)
Characterization and Comparability Laboratory, NIBRT – National Institute for Bioprocessing Research and Training, Foster Avenue, Belfield, Blackrock, Dublin, Ireland (1)
Computational Mass Spectrometry & Proteomics Group Carlos Chagas Institute, Fiocruz - PR Brazil (1)
Computational and Experimental Biology Group NOVA MEDICAL SCHOOL / FACULDADE DE CIÊNCIAS MÉDICAS UNIVERSIDADE NOVA DE LISBOA Rua Câmara Pestana, 6-6A | 1150-082 Lisboa Portugal (1)
Computational and Experimental Biology Group NOVA MEDICAL SCHOOL / FACULDADE DE CIÊNCIAS MÉDICAS UNIVERSIDADE NOVA DE LISBOA Rua Câmara Pestana, 6-6A | 1150-082 Lisboa Portugal E-mail: rune.matthiesen@nms.unl.pt | www.nms.unl.pt (1)
Departamento de Fisiologia, Laboratório de Fisiologia da Nutrição, Universidde Federal de São Paulo, Brasil (1)
Departamento de Parasitologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, Brazil (1)

Tags

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xref:EuropePMC:PMC4188998 (1)
xref:EuropePMC:PMC4357865 (1)
xref:EuropePMC:PMC10665701 (1)
xref:EuropePMC:PMC12466206 (1)

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Bridging the ICD11 and the DSM-5 personality disorders classification systems: The role of the PID5BF + M.

Not available

S-EPMC10017429 | biostudies-literature

Physicochemical Properties and Microbiome of Vineyard Soils from DOP Ribeiro (NW Spain) Are Influenced by Agricultural Management.

Not available

S-EPMC10974217 | biostudies-literature

Phase I pharmacokinetic and pharmacodynamic study of the multikinase inhibitor sorafenib in combination with clofarabine and cytarabine in pediatric relapsed/refractory leukemia.

Not available

S-EPMC3158600 | biostudies-literature

Listeria monocytogenes Sigma B, but not PrfA, shows strain specific contributions to growth under salt stress, and prolongated lag phase of a sigB null mutant across strains

Listeria monocytogenes is well known to have the ability to survive and grow under a variety of stress conditions. The ability to survive and grow under osmotic stress conditions in particular appears to be important for both growth in certain foods and food associated environments as well as for ho...

ORGANISM(S): Listeria monocytogenes

2013-07-20 | E-GEOD-49056 | biostudies-arrayexpress

Encapsulation of Beauveria bassiana conidia as a new strategy for the biological control of Aedes aegypti larvae.

Not available

S-EPMC11685528 | biostudies-literature

Metabolomics Insights in Early Childhood Caries

Dental caries is characterized by a dysbiotic shift at the biofilm-tooth surface interface, yet comprehensive biochemical characterizations of the biofilm are scant. We used metabolomics to identify biochemical features of the supragingival biofilm associated with early childhood caries (ECC) preval...

2021-01-29 | MTBLS2215 | MetaboLights

Importance of cough and M. tuberculosis strain type as risks for increased transmission within households.

Not available

S-EPMC4079704 | biostudies-literature

Psidium Defenses Against Meloidogyne enterolobii: Proteomic and Microscopic Analysis of this Plant-Predator Association.

Not available

S-EPMC12381910 | biostudies-literature

An Update on Wastewater Multi-Resistant Bacteria: Identification of Clinical Pathogens Such as Escherichia coli O25b:H4-B2-ST131-Producing CTX-M-15 ESBL and KPC-3 Carbapenemase-Producing Klebsiella oxytoca.

Not available

S-EPMC8001128 | biostudies-literature

Neem oil increases the persistence of the entomopathogenic fungus Metarhizium anisopliae for the control of Aedes aegypti (Diptera: Culicidae) larvae.

Not available