Ribosomal protein s1

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Transcriptomics (336)
Unknown (84)
Genomics (33)
Proteomics (29)
Metabolomics (14)
Other (2)

Organisms

Mus musculus (156)
Homo sapiens (96)
Saccharomyces cerevisiae (13)
Escherichia coli (8)
Gallus gallus (6)
Danio rerio (6)
Rattus norvegicus (5)
Arabidopsis thaliana (5)
Glycine max (4)
Drosophila melanogaster (4)
Escherichia coli str. K-12 substr. MG1655 (4)
Scophthalmus maximus (3)
Oryza sativa (3)
Sphingomonas sp. LH128 (2)
Rhodopseudomonas palustris (2)
uncultured bacterium (2)
Chlorocebus sabaeus (2)
mouse gut metagenome (2)
Bos taurus (2)
Prochlorococcus marinus subsp. pastoris str. CCMP1986 (2)
Calluna vulgaris (1)
Kineococcus radiotolerans (1)
Pectobacterium wasabiae (1)
Vitis labrusca x Vitis vinifera (1)
Burkholderia glumae (1)
Cimex lectularius (1)
Thalassiosira pseudonana CCMP1335 (1)
uncultured prokaryote (1)
Rana pirica (1)
Francisella tularensis subsp. tularensis SCHU S4 (1)

Organisms

Mus musculus (5)
Escherichia coli str. K-12 substr. MG1655 (2)
Streptococcus pneumoniae D39 (2)
Fundulus heteroclitus (1)
Arabidopsis thaliana (1)
Drosophila melanogaster (1)
Escherichia coli (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (353)
ENA (16)
pride (15)
MetaboLights (14)
geo (7)
MassIVE (7)
jPOST (4)
EGA (1)
GPMDB (1)
PanoramaPublic (1)

Tissue

Brain (2)
Cell culture (2)
Acute myeloid leukemia cell (1)
B cell (1)
Blood (1)
Blood cell (1)
Blood serum (1)
Embryonic stem cell (1)
Fibroblast (1)
Midgut (1)

Disease

Normal (4)
Ependymoma (1)
Mock infected (1)
Infected (1)
IBDV infected (1)
Mastitis (1)
Reference (1)
Chicken Anaemia Virus infected (1)
Collagen induced arthritis (1)
Type 1 diabetes mellitus (DM-1) (1)
Central nervous system cancer (1)
Neuroblastoma (1)
Not Available (1)
Disease free (1)
Human immunodeficiency virus infectious disease (1)
Malaria (1)

Technology Type

Mass Spectrometry (15)
Mass spectrometry (9)
Shotgun proteomics (7)
Mass spectrometry assay (5)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (2)
Gel-based experiment (2)
Top-down proteomics (2)
NMR spectroscopy assay (1)
Bottom-up proteomics (1)
HDMSE (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (24)
Illumina HiSeq 4000 (11)
NextSeq 500 (11)
Illumina HiSeq 2500 (10)
Liquid Chromatography MS - negative - reverse phase (8)
Illumina HiSeq 2000 (7)
Liquid Chromatography MS - positive - reverse phase (7)
Illumina MiSeq (5)
ScanArray 5000 [PerkinElmer] (4)
Q Exactive (3)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
Illumina NovaSeq X (2)
Orbitrap Eclipse (2)
Orbitrap Fusion (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Chromium Next GEM Chip G (1)
10X v3 (1)
Octo MACS Dissociator (1)
0.7 W LED light (1)
10X Genomics Chromium (1)
AB SOLiD 3 Plus System (1)
Computerome (1)
GenePix 4000A [Axon Instruments] (1)
NA (1)
NextSeq 2000 (1)
HiSeq X Ten (1)
Illumina HiSeq 3000 (1)
Instrument (1)
Orbitrap Fusion Lumos (1)
TripleTOF 5600 (1)

Publication Date

2013 (44)
2010 (42)
2014 (35)
2012 (35)
2011 (31)
2015 (28)
2023 (22)
2016 (20)
2009 (18)
2022 (17)
2025 (15)
2018 (13)
2008 (13)
2024 (12)
2021 (12)
2026 (10)
2017 (9)
2007 (9)
2019 (7)
2020 (5)
2006 (2)
2005 (1)
2004 (1)

CHEBI ID

CHEBI:16765 (4)
CHEBI:30915 (4)
CHEBI:15354 (4)
CHEBI:27897 (4)
CHEBI:15741 (4)
CHEBI:17596 (4)
CHEBI:18344 (3)
CHEBI:17748 (3)
CHEBI:24813 (3)
CHEBI:17562 (3)
CHEBI:16411 (3)
CHEBI:17895 (3)
CHEBI:16235 (3)
CHEBI:16530 (3)
CHEBI:16040 (3)
CHEBI:15611 (3)
CHEBI:16977 (3)
CHEBI:32816 (3)
CHEBI:17351 (3)
CHEBI:16335 (3)
CHEBI:15756 (3)
CHEBI:15603 (3)
CHEBI:30769 (3)
CHEBI:16865 (3)
CHEBI:28842 (3)
CHEBI:15428 (3)
CHEBI:16708 (3)
CHEBI:16704 (3)
CHEBI:17568 (3)
CHEBI:17822 (3)

Metabolite Name

Choline (4)
Sphinganine (4)
Indole (4)
Palmitoyl Ethanolamide (3)
Indolelactic acid (3)
Tryptamine (3)
Indoleacrylic acid (3)
Chavicol (3)
Cytosine (3)
Pacific Ciguatoxin 4A (2)
Val-leu-pro-val-pro-gln (2)
5-Oxo-delta-bilirubin (2)
Lyso-PAF C-16 (2)
2,2,6,6-Tetramethyl-4-piperidinol (2)
Oleandomycin (2)
Phenol sulfate (2)
3alpha,11beta,21-Trihydroxy-20-oxo-5beta-pregnan-18-al (2)
Lysine conjugated cholic acid (2)
(Z)-[(4-hydroxyphenyl)acetaldehyde oxime] (2)
Beta-Ionone (2)
Asparaginylisoleucine (2)
Gentamicin C2 (2)
Oleanolic acid (2)
Phosphocholine (2)
LysoPC(18:3(6Z,9Z,12Z)/0:0) (2)
1-Monopalmitin (2)
Citrulline (2)
Vanylglycol (2)
P-Coumaroylagmatine (2)
Leu-Leu-Leu (2)

First Public Date

2014 (7)
2023 (3)
2022 (2)
2020 (2)
2025 (1)
2019 (1)

Classification

bacteria (5)

Study type

Transcription profiling by array (187)
RNA-seq of coding RNA (78)
ChIP-seq (11)
RNA-seq of coding RNA from single cells (10)
RNA-seq of non coding RNA (10)
Other (8)
RNA-seq of total RNA (6)
Unknown experiment type (5)
Animal - High-throughput sequencing (4)
ChIP-chip by tiling array (3)
Cell line - High-throughput sequencing (3)
ChIP-chip by array (3)
DNA-seq (3)
Comparative genomic hybridization by array (2)
RIP-seq (2)
Ribo-seq (2)
Single nucleus RNA sequencing (2)
MicroRNA profiling by array (2)
Proteomic profiling by array (2)
Differential (1)
Cell line - One-color microarray (1)
Translation profiling (1)
RNAi profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2013 (45)
2012 (42)
2010 (42)
2014 (38)
2011 (33)
2015 (32)
2022 (22)
2016 (22)
2009 (22)
2023 (16)
2008 (16)
2021 (15)
2018 (15)
2020 (11)
2017 (11)
2007 (10)
2024 (9)
2019 (9)
2025 (8)
2026 (7)
2006 (4)
2005 (2)
2004 (2)
2001 (2)
2000 (1)
1998 (1)

Lab affiliation

McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX, USA (2)
Associate Professor, Division of Hematology, Department of Internal Medicine, The Ohio State University Wexner Medical Center (1)
Department of Cellular Biochemistry, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany (1)
Department of Chemistry & Chemical Biology, Northeastern University (1)
Department of Genetics, Stanford School of Medicine, USA (1)
Department of Immunology, Microbiology and Parsitology Faculty of Science and Technology University of the Basque Country (UPV/EHU) (1)
Department of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, The Netherlands (1)
Dept. Proteomics and Signal Transduction Max-Planck Institute of Biochemistry Germany (1)
Emerging Pathogens Institute, University of Florida (1)
Max-Delbrueck-Centre for Molecular Medicine (MDC), Berlin, Germany. (1)
Principal investigator (1)
Prof. Dr. Martin von Bergen Helmholtz Centre for Environmental Research - UFZ Head of Department for Molecular Systems Biology http://www.ufz.de/index.php?de=17634 Professor of Functional Proteomics Faculty of Life Sciences, Pharmacy and Psychology University of Leipzig Permoserstr. 15 04318 Leipzig GERMANY (1)
University of Puerto RIco, Medical Sciences Campus, Translational Proteomics Center (1)
Vilnius univeristy, Life Science Center, EBML PI (1)

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Biosynthesis of Isonitrile Lipopeptides by Conserved Non-ribosomal Peptide Synthetase Gene Clusters in Actinobacteria

A putative lipopeptide biosynthetic gene cluster is conserved in many species of Actinobacteria, including Mycobacterium tuberculosis and Mycobacterium marinum, but the specific function of the encoding proteins has been elusive. Using both in vivo heterologous reconstitution and in vitro biochemica...

2017-07-18 | MTBLS454 | MetaboLights

Identification of Amyloidogenic Regions in Pseudomonas aeruginosa Ribosomal S1 Protein.

Not available

S-EPMC8305250 | biostudies-literature

Two distinct promoter architectures centered on dynamic nucleosomes control ribosomal protein gene transcription

In yeast, ribosome production is controlled transcriptionally by tight coregulation of the 138 ribosomal protein genes (RPGs). RPG promoters display limited sequence homology, and the molecular basis for their coregulation remains largely unknown. Here we identify two prevalent RPG promoter types, b...

ORGANISM(S): Saccharomyces cerevisiae

2014-10-01 | E-GEOD-61596 | biostudies-arrayexpress

Exploring Amyloidogenicity of Peptides From Ribosomal S1 Protein to Develop Novel AMPs.

Not available

S-EPMC8416663 | biostudies-literature

Antimicrobial and Amyloidogenic Activity of Peptides Synthesized on the Basis of the Ribosomal S1 Protein from Thermus Thermophilus.

Not available

S-EPMC7504387 | biostudies-literature

Molecular insights into replication initiation by Qβ replicase using ribosomal protein S1.

Not available

S-EPMC4176380 | biostudies-literature

Ribosomal protein S1 influences trans-translation in vitro and in vivo.

Not available

S-EPMC1874662 | biostudies-literature

Expression of sense and antisense transcripts at the ribosomal locus

Epigenetic methyl-CpG silencing of the ribosomal RNA (rRNA) genes is thought to down-regulate rRNA synthesis in mammals. In contrast, we now show that CpG methylation in fact positively influences rRNA synthesis and processing. Human HCT116 cells, inactivated for DNMT1 and DNMT3b or treated with aza...

ORGANISM(S): Homo sapiens

2010-05-16 | E-GEOD-17042 | biostudies-arrayexpress

Amyloidogenic Propensities of Ribosomal S1 Proteins: Bioinformatics Screening and Experimental Checking.

Not available

S-EPMC7432502 | biostudies-literature

S1 ribosomal protein and the interplay between translation and mRNA decay.

Not available

S-EPMC3177188 | biostudies-literature

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503 Results

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