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ProteomicsRice (Oryza sativa) proteome
Here, we present OryzaPG-DB, a rice proteome database based on shotgun proteogenomics, which incorporates the genomic features of experimental shotgun proteomics data. This version of the database was created from the results of 27 nanoLC-MS/MS runs on a hybrid ion trap-orbitrap mass spectrometer, w...
ORGANISM(S): Oryza Sativa 
2016-07-20 | PXD004603 | JPOST Repository
TranscriptomicsSpatial transcriptomes of iron-deficient and cadmium-stressed rice
Several metals are essential nutrients for plants but metals are toxic in excess, deleteriously affecting crop yield and quality. Various kinds of genes involved in metal homeostasis have been investigated in detail over the past few decades and the mechanisms of how metals are absorbed from soil an...
ORGANISM(S): Oryza sativa 
2013-12-31 | E-GEOD-40549 | biostudies-arrayexpress
TranscriptomicsGene expression profile of rice shoot in response to macronutrient deficiency
Macronutrients are pivotal elements for proper plant growth and development. We performed microarray analysis of rice shoot under nitrogen (N), phosphorus (P), and potassium (K) deficiency conditions to obtain a global view of gene regulations associated with plant response to essential nutrients. W...
ORGANISM(S): Oryza sativa Japonica Group 
2015-08-12 | E-GEOD-66935 | biostudies-arrayexpress
TranscriptomicsSpatio-temporal gene expression of various tissues/organs throughout entire growth in rice
An overview of the expression pattern of all rice genes under natural field conditions based on microarray analysis of different organs and tissues at various stages of growth and development from transplanting to harvesting. A total of 48 samples representing organs/tissues at various stages of gro...
ORGANISM(S): Oryza sativa Japonica Group 
2011-01-13 | E-GEOD-21396 | biostudies-arrayexpress
TranscriptomicsAgilent 44K Rice Oligo DNA Microarray RAP-DB (G2519F#15241); genome-wide transcriptional analysis of Aluminum-responsive genes in rice (Oryza sativa).
By comparing transcriptional profiling between a wild-type rice and an Al-sensitive rice mutant star1, we found that rice possesses novel mechanisms of Al-tolerance in addition to ART1-regulated mechanism in rice. The transcriptional profiling between the wild-type rice and an Al-sensitive mutant, s...
ORGANISM(S): Oryza sativa 
2012-09-19 | E-GEOD-40964 | biostudies-arrayexpress
TranscriptomicsLeaf gene expression profile of rice during sunset
A continuous gene expression profiling of leaves was performed at regular interval during the sunset period to understand the changes of transcriptional program in the rice plant grown under natural field conditions in response to solar radiation. At 78 days after transplanting, leaf samples corresp...
ORGANISM(S): Oryza sativa Japonica Group 
2012-12-03 | E-GEOD-36044 | biostudies-arrayexpress
TranscriptomicsRice expression atlas (5): Anther development (Agilent data)
Gene expression throughout the reproductive process in rice (Oryza sativa) beginning with primordia development through pollination/fertilization to zygote formation was analyzed. We analyzed 25 stages/organs of rice reproductive development including early microsporogenesis stages with 57,381 probe...
ORGANISM(S): Oryza sativa 
2010-11-11 | E-GEOD-14301 | biostudies-arrayexpress
TranscriptomicsLeaf gene expression profile of rice during sunrise
A continuous gene expression profiling of leaves was performed at regular interval during the sunrise period to understand the changes of transcriptional program in the rice plant grown under natural field conditions in response to solar radiation. At 79 days after transplanting, leaf samples corres...
ORGANISM(S): Oryza sativa Japonica Group 
2012-12-03 | E-GEOD-36043 | biostudies-arrayexpress
TranscriptomicsContinuous gene expression profile of root at daytime throughout the entire growth of rice in the field
A continuous gene expression profiling of roots was performed during daytime at regular interval from transplanting until harvesting to characterize the transcriptional and physiological changes in the root system of rice throughout the entire growth under natural field conditions. Roots were sample...
ORGANISM(S): Oryza sativa Japonica Group 
2012-12-03 | E-GEOD-39424 | biostudies-arrayexpress
TranscriptomicsContinuous gene expression profile of root at nighttime throughout the entire growth of rice in the field
A continuous gene expression profiling of roots was performed during nighttime at regular interval from transplanting until harvesting to characterize the transcriptional and physiological changes in the root system of rice throughout the entire growth under natural field conditions. Roots were samp...
ORGANISM(S): Oryza sativa Japonica Group 
2012-12-03 | E-GEOD-39425 | biostudies-arrayexpress
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