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TranscriptomicsTranscriptome analysis of rice (Oryza sativa cv.TW16) in relation to infection with rice tungro spherical virus (RTSV)
Rice tungro disease is caused by the interaction between Rice tungro spherical virus (RTSV) and Rice tungro bacilliform virus. Infection with RTSV alone does not result in any distinctive symptoms in TW16 that is one of RTSV resistant indica rice. To elucidate the basis of asymptomatic response of r...
ORGANISM(S): Oryza sativa Indica Group 
2010-05-18 | E-GEOD-16140 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of rice in relation to infection with rice tungro spherical virus (RTSV)
This SuperSeries is composed of the following subset Series: GSE16140: Transcriptome analysis of rice (Oryza sativa cv.TW16) in relation to infection with rice tungro spherical virus (RTSV) GSE16141: Transcriptome analysis of rice (Oryza sativa cv. Taichung Native 1) in relation to infection with RT...
ORGANISM(S): Oryza sativa Indica Group 
2010-05-18 | E-GEOD-16142 | biostudies-arrayexpress
TranscriptomicsExpression analysis of RCc3:OsNAC10 and GOS2:OsNAC10 transgenic rice plants
For identification of genes up-regulated in RCc3:OsNAC10, GOS2:OsNAC10 plants, total RNA (100 μg) was prepared from root and leaf tissues of 14-d-old transgenic and non-transgenic rice seedlings (Oryza sativa cv Nipponbare) grown under normal growth conditions. Expression profiling was conducted usi...
ORGANISM(S): Oryza sativa 
2011-09-05 | E-GEOD-31858 | biostudies-arrayexpress
TranscriptomicsExpression analysis of OsCc1:AP37 and OsCc1:AP59 transgenic rice plants
For identification of genes up-regulated in OsCc1:AP37, OsCc1:AP59 plants, total RNA (100 ?g) was prepared from leaf tissues of 14-d-old transgenic and non-transgenic rice seedlings (Oryza sativa cv Nipponbare) grown under normal growth conditions. Expression profiling was conducted using a Rice 3’-...
ORGANISM(S): Oryza sativa 
2011-09-05 | E-GEOD-31859 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of rice (Oryza sativa cv. Taichung Native 1) in relation to infection with RTSV
Rice tungro disease is caused by the interaction between Rice tungro spherical virus (RTSV) and Rice tungro bacilliform virus. Infection with RTSV alone does not result in any distinctive symptoms in Taichung Native 1 (TN1) that is one of RTSV susceptive indica rice cultivar. To elucidate the basis ...
ORGANISM(S): Oryza sativa Indica Group 
2010-05-18 | E-GEOD-16141 | biostudies-arrayexpress
TranscriptomicsExpression analysis of CaMsrB2-transformed rice (Oryza sativa L. cv. ILMI) without/with Bar selection marker under drought stress conditions
Methionine sulfoxide reductases catalyze the reduction of MetSO back to the correct Met residue. Previously, the gene of Capsicum annuum methionine sulfoxide reductase B2 was isolated and CaMSRB2-overexpressing tomato shows enhanced growth, which may trigger increased resistance to the pathogens. To...
ORGANISM(S): Oryza sativa 
2013-04-01 | E-GEOD-41204 | biostudies-arrayexpress
GenomicsLocal DNA hypomethylation activates genes in rice endosperm
Cytosine methylation silences transposable elements in plants, vertebrates and fungi, but also regulates gene expression1. Plant methylation is catalyzed by three families of enzymes, each with a preferred sequence context: CG, CHG (H = A, C or T) and CHH, with CHH methylation targeted by the RNA in...
ORGANISM(S): Oryza sativa 
2010-11-01 | E-GEOD-22591 | biostudies-arrayexpress
TranscriptomicsRNA-seq of Oryza sativa L. Dongjin and Iksan 526 seeds at 20 days after heading
The resveratrol-producing rice (Oryza sativa L.) inbred line, Iksan 526 (I.526), developed by the expression of the groundnut (Arachis hypogaea) resveratrol synthase 3 (AhRS3) gene in the japonica rice cultivar Dongjin, accumulated both resveratrol and its glucoside, piceid, in leaves and seeds. Esp...
ORGANISM(S): Oryza sativa Japonica Group 
2020-12-20 | E-MTAB-9695 | biostudies-arrayexpress
TranscriptomicsMethanol is an endogenous elicitor molecule upon senescence of detached rice leaves
During senescence of detached rice leaves, tryptophan (Trp) and Trp-derived secondary metabolites such as serotonin and 4-coumaroylserotonin accumulated in concert with methanol (MeOH) production. This senescence-induced MeOH induction was closely associated with levels of pectin methylesterase (PME...
ORGANISM(S): Oryza sativa 
2011-01-03 | E-GEOD-26387 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of rice plants exposed to jasmonic acid (JA)
In this study, integrated transcriptomics and proteomics approaches were applied to investigate the molecular responses of JA in the shoots of 7-days old rice (cv. Nipponbare) seedlings exposed to 5 micromolar JA for a period of 7 days. Based on the morphological alteration of JA-exposed rice seedli...
ORGANISM(S): Oryza sativa 
2008-06-11 | E-GEOD-11158 | biostudies-arrayexpress
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