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TranscriptomicsTSSdelta rppH vsdelta rppHdelta hns double mutant
Transcription start site mapping in Escherichia coli delta rppH vs delta rppH delta hns at 30C
ORGANISM(S): Escherichia coli 
2013-12-15 | E-MTAB-2150 | biostudies-arrayexpress
UnknownEvaluation of Potential DnaK Modulating Proline-Rich Antimicrobial Peptides Identified by Computational Screening.
Not available
S-EPMC9043238 | biostudies-literature
Unknown(Re)Defining the Proline-Rich Antimicrobial Peptide Family and the Identification of Putative New Members.
Not available
S-EPMC7736402 | biostudies-literature
UnknownEnhancing proline-rich antimicrobial peptide action by homodimerization: influence of bifunctional linker.
Not available
S-EPMC8864714 | biostudies-literature
GenomicshilD ChIP Seq
HilD is a regulator of Salmonella pathogenicity island 1 (SPI-1) virulence genes in Salmonella enterica serovar Typhimurium. To identify novel HilD-regulated genes, we mapped the genome-wide association of HilD in S. Typhimurium under SPI-1-inducing conditions (high salt, low aeration) using ChIP-se...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. 14028s Wu 
2013-09-19 | E-MTAB-1848 | biostudies-arrayexpress
GenomicsMG1655 flagellar regulator ChIP-seq (FlhD, FlhC, FliA)
We mapped the genome-wide binding of the flagellar regulators FlhD, FlhC, and FliA in FLAG-tagged derivatives of E. coli K-12 MG1655 using ChIP coupled with deep sequencing (ChIP-seq). We identify new binding sites for each factor.
ORGANISM(S): Escherichia coli 
2014-04-10 | E-MTAB-2457 | biostudies-arrayexpress
GenomicsChIP-seq of sigma 70 in wild-type and hns mutant Escherichia coli K-12 MG1655
We mapped the genome-wide binding of sigma 70 in E. coli K-12 MG1655 and an hns mutant that is otherwise isogenic using ChIP coupled with deep sequencing (ChIP-seq). We show that intragenic binding of sigma 70 is increased in the hns mutant.
ORGANISM(S): Escherichia coli 
2013-12-15 | E-MTAB-2148 | biostudies-arrayexpress
TranscriptomicsSuhB associates with Nus factors to facilitate 30S ribosome biogenesis in Escherichia coli
This experiment consists of two studies. The first where two independent biological replicates of MG1655, MG1655 thyA suhB::thyA and MG1655 thyA nusB::thyA were each grown in LB to mid-exponential phase. RNA-seq and associated data analysis were performed as described previously (Stringer et al., 20...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2016-01-20 | E-MTAB-4240 | biostudies-arrayexpress
TranscriptomicsMG1655 Flagellar Regulators RNA-seq
This experiment contains RNA-seq data for a motile derivative of MG1655 and isogenic strains with deletions of each flagellar regulator: flhD, flhC, and fliA. All strains were grown at 37 degrees C in LB. After RNA purification, ribosomal RNA was removed using RiboZero and a library was made of rema...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2014-08-01 | E-MTAB-2802 | biostudies-arrayexpress
Transcriptomics14028s araC RNA-Seq
We used RNA-seq to determine the effects of AraC and arabinose on RNA levels genome-wide in S. enterica. Wild-type or delta araC mutant cells were grown in both the presence and absence of 0.2% L-arabinose. RNA-Seq libraries from two independent biological replicate samples were sequenced for (i) wi...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. 14028s Wu 
2013-10-04 | E-MTAB-1901 | biostudies-arrayexpress
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