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GenomicsHfq RIL-seq analysis
Hfq RIL-seq analysis
PRJNA816425 | ENA
GenomicsHfq RIL-seq in Salmonella
Hfq RIL-seq in Salmonella
PRJNA685767 | ENA
GenomicsArcZ comparative RIL-seq
ArcZ comparative RIL-seq
PRJEB33914 | ENA
TranscriptomicsRIL-seq of EPEC E2348/69 hfq-flag, in virulence activating and non-activating conditions.
RIL-seq experiment of EPEC hfq-flag mutant, in activating- conditions:growth on DMEM at 37°C to mid exponential growth phase (e.g., OD600=0.3). In these conditions EPEC strongly expresses its major virulence components, T3SS and BFP, mimicking infection. Non-activating conditions: overnight growth o...
ORGANISM(S): Escherichia coli 
2021-01-29 | E-MTAB-8806 | biostudies-arrayexpress
GenomicsPAO1 Hfq-V RIL-seq
PAO1 Hfq-V RIL-seq
PRJNA892138 | ENA
UnknownPrediction of Novel Bacterial Small RNAs From RIL-Seq RNA-RNA Interaction Data.
Not available
S-EPMC8175672 | biostudies-literature
TranscriptomicsRIL-seq analysis of MG1655 Escherichia coli experiencing long-term nitrogen starvation in Gutnick minimal media
RNA interaction by ligation and sequencing (RIL-seq) was carried out to compare the Hfq-RNA-RNA interactome of MG1655 E coli bacteria that grown in Gutnick minimal media. Wild-type and hfq::3xFLAG tagged K12 E.coli were grown in Gutnick minimal media with 3mM NH4Cl as the sole nitrogen source, and ...
ORGANISM(S): Escherichia coli K-12 
2023-12-01 | E-MTAB-13403 | biostudies-arrayexpress
GenomicsRIL-seq analysis of B. pertussis Tohama I in exponential phase
BP exponential RIL-seq
PRJEB79241 | ENA
GenomicsRIL-seq analysis of B. pertussis Tohama I in stationary phase
BP stationary RIL-seq
PRJEB79483 | ENA
OtherHfq RIL-seq analysis
In this study we used RIL-seq (RNA interaction by ligation and sequencing) to identify Hfq-mediated RNA-RNA interactions in V. cholerae.
ORGANISM(S): Vibrio cholerae 
2022-11-15 | GSE198671 | GEO
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