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TranscriptomicsGenetic characterization of tumor-stage mycosis fungoides
Mycosis fungoides patients who develop tumors or extracutaneous involvement usually have a poor prognosis with no curative therapy available so far. In the present EORTC multicenter study, the genomic profile of 41 skin biopsies from tumor-stage mycosis fungoides was analyzed using a high-resolution...
ORGANISM(S): Homo sapiens 
2010-05-06 | E-GEOD-18098 | biostudies-arrayexpress
Transcriptomicsgene mapping in the physical map of the Triticum aestivum chromosome arm 1BL
To improve our understanding of the organization and evolution of the wheat gene space, we established the first map of genes of the wheat chromosome 1BL by hybridizing the newly developed INRA GDEC Triticum aestivum NimbleGen 12x40k unigenes microarray (A-MEXP-2314) with BAC pools from the 1BL phys...
ORGANISM(S): Triticum aestivum 
2013-06-01 | E-MTAB-1650 | biostudies-arrayexpress
Transcriptomicscgh_colvsc24_wg-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions
a2e_heterosis - cgh_colvsc24_wg - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - Comparative genome hybridization between Arabidopsis thaliana accessions Col-0 and C24. cgh; tech...
ORGANISM(S): Arabidopsis thaliana 
2011-05-17 | E-GEOD-24831 | biostudies-arrayexpress
Transcriptomicscgh_colvscvi_wg-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions
a2e_heterosis - cgh_colvscvi_wg - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - Comparative genome hybridization between Arabidopsis thaliana accessions Col-0 and CVi. 2 dye-swa...
ORGANISM(S): Arabidopsis thaliana 
2011-05-17 | E-GEOD-24835 | biostudies-arrayexpress
TranscriptomicsSMC5/6 facilitates joint molecule resolution and stepwise loss of cohesin to promote meiotic chromosome segregation
During meiosis, Structural Maintenance of Chromosome (SMC) complexes underpin two fundamental features of meiosis: homologous recombination and chromosome segregation. While meiotic functions of the cohesin and condensin complexes have been delineated, the role of the third SMC complex, Smc5/6, rema...
ORGANISM(S): Saccharomyces cerevisiae 
2013-12-27 | E-GEOD-44852 | biostudies-arrayexpress
Transcriptomicsgene mapping in the physical map of the Triticum aestivum chromosome arm 1BS
To improve our understanding of the organization and evolution of the wheat gene space, we established the first map of genes of the wheat chromosome 1BS by hybridizing the newly developed INRA GDEC Triticum aestivum NimbleGen 12x40k unigenes microarray (A-MEXP-2314) with 3D-pools of MTP BACs of fro...
ORGANISM(S): Triticum aestivum 
2013-12-06 | E-MTAB-1912 | biostudies-arrayexpress
TranscriptomicsISBP mapping in the physical map of the Triticum aestivum chromosome arm 1BL
To improve the resources for map-based cloning and sequencing of the wheat genome, we established a physical map of the wheat chromosome 1BL with a high density of markers by hybridizing the newly developed INRA GDEC Triticum aestivum NimbleGen 12x17k ISBP microarray (A-MEXP-2312) with BAC pools fro...
ORGANISM(S): Triticum aestivum 
2013-06-01 | E-MTAB-1657 | biostudies-arrayexpress
Transcriptomicscgh_colvsc24_chr4-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions
a2e_heterosis - cgh_colvsc24_chr4 - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - Comparative genome hybridization between Arabidopsis thaliana accessions Col-0 and C24 Keyword...
ORGANISM(S): Arabidopsis thaliana 
2011-05-17 | E-GEOD-24494 | biostudies-arrayexpress
TranscriptomicsYap1/Birc, c-Met and N-ras DNA amplifications are mutually exclusive in mouse mammary tumors.
Tumors acquire somatic DNA copy number aberrations, leading to activation of oncogenes and inactivation of tumor suppressors. Many studies have focused on the analysis of single copy number aberrations and associated driver genes, but few studies have performed combinatorial analyses. We propose a g...
ORGANISM(S): Mus musculus 
2011-12-01 | E-GEOD-28432 | biostudies-arrayexpress
TranscriptomicsAnalysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions
This SuperSeries is composed of the following subset Series: GSE24494: cgh_colvsc24_chr4-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions GSE24831: cgh_colvsc24_wg-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions...
ORGANISM(S): Arabidopsis thaliana 
2011-05-17 | E-GEOD-24836 | biostudies-arrayexpress
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