Rna affinity purification

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Proteomics (1009)
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Genomics (813)
Unknown (608)
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Methylation profiling (4)
Multiomics (4)
Metabolomics (2)

Organisms

Homo sapiens (411)
Mus musculus (400)
Caenorhabditis elegans (224)
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Zea mays (14)
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Escherichia coli str. K-12 substr. MG1655 (12)
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Rattus norvegicus (11)
Staphylococcus aureus (11)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (8)
Chlorocebus sabaeus (8)
Trypanosoma brucei (8)
Sinorhizobium meliloti (7)
Bacillus subtilis (6)
Equus caballus (4)
Campylobacter jejuni (4)
Bos taurus (4)
Gallus gallus (3)
Bacillus subtilis subsp. subtilis str. 168 (2)
Macaca mulatta (2)
Corynebacterium glutamicum (2)
Enterococcus faecium (2)
Mycobacterium tuberculosis (2)
Streptococcus pneumoniae (2)
Mesocricetus auratus (2)

Organisms

Mus musculus (150)
Homo sapiens (73)
Drosophila melanogaster (18)
Arabidopsis thaliana (14)
Saccharomyces cerevisiae (10)
Escherichia coli K-12 (9)
Staphylococcus aureus (9)
Caenorhabditis elegans (8)
Zea mays (5)
Danio rerio (4)
Rattus norvegicus (4)
Trypanosoma brucei brucei (3)
Neurospora crassa (2)
Schizosaccharomyces pombe (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Plasmodium falciparum (2)
Gossypium hirsutum (2)
Vitis vinifera (2)
Glycine max (2)
Pseudomonas aeruginosa (2)
Solanum tuberosum (2)
Microtus ochrogaster (1)
Brucella melitensis M5-90 (1)
Deinococcus radiodurans (1)
Alternanthera philoxeroides (1)
Lactococcus cremoris subsp. cremoris MG1363 (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
Trypanosoma brucei (1)
Zymomonas mobilis (1)
Camelina sativa (1)

Repository

biostudies-arrayexpress (1148)
pride (910)
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geo (254)
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Tissue

Cell culture (325)
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Disease

Disease free (36)
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Cockayne syndrome (2)
Bone giant cell tumor (2)
Frontotemporal dementia (2)
Dengue disease (2)
Vitamin B12 deficiency (1)
Not yet visible (1)
Cirrhosis (1)

Technology Type

Mass Spectrometry (910)
Affinity purification coupled with mass spectrometry proteomics (820)
Shotgun proteomics (253)
Bottom-up proteomics (96)
Gel-based experiment (63)
Data-dependent acquisition (60)
Chemical cross-linking coupled with mass spectrometry proteomics (31)
Data-independent acquisition (16)
SWATH MS (14)
Top-down proteomics (12)
HDMSE (8)
SRM/MRM (7)
All-ion fragmentation (5)
Mass spectrometry imaging (4)
PAcIFIC (3)
DiaPASEF (3)
Mass spectrometry (2)
RNA mass spectrometry (2)
MSE (2)
Illumina Genome Analyzer II (1)
Proteogenomics (1)
Affinity proteomics (1)
Immunopeptidomics (1)

Instrument Platform

NextSeq 500 (43)
Illumina HiSeq 2500 (31)
Illumina NovaSeq 6000 (28)
Illumina HiSeq 2000 (27)
NextSeq 550 (13)
Illumina HiSeq 4000 (10)
NextSeq 2000 (8)
Illumina NovaSeq X (5)
Illumina Genome Analyzer IIx (4)
Axon GenePix 4000B scanning hardware (4)
Retsch MM400 (2)
Illumina Genome Analyzer II (2)
Affymetrix (2)
Illumina MiSeq (2)
Agilent SureScan Microarray Scanner G2600D (1)
-- (1)
Cutadapt, STAR (1)
TruSeq Stranded mRNA Sample Prep Kit (Illumina) (1)
BD InFlux Cytometer (Becton-Dickinson) (1)
In Silico Molecular Cloning Program (1)
Axon GenePix 4000A scanning hardware (1)
Unspecified (1)
Agilent Microarray Scanner (mod. G2505C) (1)
G2500A Hewlett Packard (1)
Affymetrix Fluidics Station 400 (1)
Flow Cytometer (1)
NA (1)
Illumina HiSeq X (1)
Illumina HiSeq 1000 (1)
Illumina NextSeq 500 (1)

Publication Date

2013 (261)
2023 (188)
2025 (170)
2022 (164)
2021 (164)
2014 (162)
2015 (152)
2024 (138)
2026 (136)
2012 (128)
2020 (118)
2011 (109)
2016 (108)
2019 (96)
2018 (92)
2017 (66)
2010 (63)
2008 (31)
2009 (29)
2007 (11)
2006 (9)
2005 (5)
2004 (1)

UNIPROT ID/AC

E0CYZ8_MOUSE (3)
TCL1A_MOUSE (3)
A14EL_MOUSE (3)
TSX_MOUSE (3)
ATG12_MOUSE (3)
RPAB2_MOUSE (3)
DPPA4_MOUSE (3)
S1PBP_MOUSE (3)
ZN287_MOUSE (3)
RPP25_MOUSE (3)
TCAL8_MOUSE (3)
DPA5A_MOUSE (3)
CBPC3_MOUSE (3)
LN28A_MOUSE (3)
XL3C_MOUSE (3)
CLCF1_MOUSE (3)
PHC1_MOUSE (3)
PO5F1_MOUSE (3)
XL3B_MOUSE (3)
GTSF1_MOUSE (3)
OOEP_MOUSE (3)
M1AP_MOUSE (3)
MSD2_MOUSE (3)
PALM3_MOUSE (3)
MTF1_MOUSE (3)
CB076_MOUSE (3)
ALKB4_MOUSE (3)
TEX11_MOUSE (3)
SOX2_MOUSE (3)
MK07_MOUSE (3)

CHEBI ID

CHEBI:16704 (2)
CHEBI:16335 (2)
CHEBI:16750 (2)
CHEBI:17562 (2)
CHEBI:17596 (2)
CHEBI:20597 (1)
CHEBI:20598 (1)
CHEBI:62005 (1)
CHEBI:11814 (1)
CHEBI:25294 (1)
CHEBI:165842 (1)
CHEBI:194376 (1)
CHEBI:191711 (1)
CHEBI:144330 (1)
CHEBI:17517 (1)
CHEBI:16337 (1)
CHEBI:86952 (1)
CHEBI:177051 (1)
CHEBI:15533 (1)
CHEBI:15539 (1)
CHEBI:133083 (1)
CHEBI:16894 (1)
CHEBI:15473 (1)
CHEBI:15517 (1)
CHEBI:17837 (1)
CHEBI:17980 (1)
CHEBI:29052 (1)
CHEBI:167608 (1)
CHEBI:16595 (1)
CHEBI:18303 (1)

Metabolite Name

Propionyl coenzyme A (1)
Phosphatidic Acid (1)
Ketoglutaric acid (1)
D-myo-Inositol-1,4,5-triphosphate (1)
Deoxyguanylate (1)
Cytidine 5-diphosphocholine (1)
Acetylamino-acetic acid (1)
6-Deoxy-L-galactonic acid (1)
3-Phosphoadenosine 5-phosphosulfate (1)
3-hydroxypentanedioic acid (1)
3-Hydroxybutyryl coenzyme A (1)
2-Deoxyuridine 5-monophosphate (1)
2-Deoxy-D-ribonic acid (1)
2-Deoxy-5-cytidylic acid (1)
2,3-Diphospho-D-glyceric acid (1)
2-(Hydroxymethyl)butanoic acid (1)
Uridine 5-diphosphogalactose (1)
Pyridoxamine-5-phosphate (1)
N-Hexanoyl-glycine (1)
Ne-Acetyl-lysine (1)
Nalpha-Acetyl-L-lysine (1)
L-a-Aspartyl-L-phenylalanine (1)
D-galactaric acid (1)
A-Methylbutyrylglycine (1)
Adenosine 5-phosphosulfate (1)
Uridine 5-diphospho-N-acetylgalactosamine (1)
S-(5-Adenosyl)-L-methionine (1)
Riboflavin 5-monophosphate (1)
N-a-Acetyl-L-ornithine (1)
N,N-Diacetylchitobiose (1)

First Public Date

2025 (46)
2023 (44)
2026 (40)
2024 (38)
2022 (35)
2021 (35)
2014 (34)
2020 (30)
2017 (26)
2018 (19)
2019 (17)
2013 (16)
2015 (14)
2016 (5)
2012 (1)
2011 (1)

Classification

bacteria (26)
protozoa (6)
fungi (1)

Modification

N6 (2)
2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
-17.026549 (1)
42.010565 (1)
15.994915 (1)
4x(2)H labeled dimethylated L-lysine (1)
Not available (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

ChIP-seq (359)
Transcription profiling by array (270)
RNA-seq of coding RNA (261)
Other (83)
Ribo-seq (30)
Methylation profiling by high throughput sequencing (22)
ChIP-chip by array (21)
RNA-seq of non coding RNA (19)
ChIP-chip by tiling array (17)
Unknown experiment type (7)
Translation profiling (7)
Methylation profiling by array (7)
RNA-seq of total RNA (6)
Transcription profiling by tiling array (5)
RNA-seq of coding RNA from single cells (5)
High-throughput sequencing (4)
Cell line - High-throughput sequencing (4)
Comparative genomic hybridization by array (3)
RIP-seq (2)
Transcription profiling by array, ChIP-chip by array (1)
Transcription profiling by SAGE (1)
RNA-seq of non coding RNA from single cells (1)
Animal - Single-cell sequencing (1)
Human - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Human - One-color microarray (1)
Genotyping by array (1)
CLIP-seq (1)
MicroRNA profiling by high throughput sequencing (1)

Release Date

2013 (272)
2014 (167)
2015 (160)
2012 (144)
2011 (123)
2016 (109)
2021 (92)
2025 (78)
2010 (78)
2023 (68)
2024 (58)
2022 (58)
2017 (58)
2020 (46)
2009 (46)
2018 (44)
2008 (35)
2019 (33)
2026 (25)
2007 (15)
2005 (15)
2006 (14)
2004 (9)
2003 (3)
2002 (3)
2001 (2)
1999 (1)

Lab affiliation

UMR 7367 CNRS-UL IMoPA Biopôle de l'Université de Lorraine Campus Brabois-Santé 9 avenue de la forêt de Haye 54505 Vandoeuvre-les-Nancy FRANCE (8)
MRC Toxicology Unit, University of Cambridge, UK (5)
Institute of Molecular Biology (IMB), Mainz, Germany (5)
EDyP (5)
Moffitt Cancer Center Tampa, FL, USA (5)
University of Oxford (5)
Department of Proteomics and Signal Transduction, Max-Planck-Institute of Biochemistry, Munich, Germany (5)
Drug Discovery Moffitt Cancer Center Tampa, FL, USA (5)
Biochemistry Center Heidelberg, University of Heidelberg, Germany (4)
Department of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, Bunkyo-ku, Tokyo 113-8656, Japan. (4)
CRUK Cambridge Institute University of Cambridge Li Ka Shing Centre Robinson Way CB2 0RE Cambridge United Kingdom (4)
Sir William Dunn School of Pathology, University of Oxford (4)
Novartis Inst. for BioMedical Research (4)
Thoracic Oncology Molecular Medicine Program Moffitt Cancer Center Tampa, FL, USA (4)
German Cancer Consortium (DKTK), partner site Freiburg German Cancer Research Center (DKFZ) Foundation under Public Law c/o Department of Urology Zentrale Klinische Forschung (ZKF) Medical Center-University of Freiburg Breisacher Str. 66, 79106 Freiburg, Germany (4)
Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France (3)
Medical Oncology and Pulmonology, University Hospital Tübingen, Germany (3)
Head of System Biology Lab. at Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Russia (3)
Buchmann Institute of Molecular Life Sciences and Institute of Biophysical Chemistry, Goethe University, Frankfurt am Main, Germany (3)
Centre for Cancer Cell & Molecular Biology Barts Cancer Institute Queen Mary University of London Charterhouse Square London EC1M 6BQ U.K. (3)
Medical University of Innsbruck - Biocenter, Division of Genomics & RNomics (3)
University of Dundee, School of Life Sciences (3)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS) (3)
Department of Immunology, College of Basic Medical Science, China Medical University, Shenyang, Liaoning 110122, China (3)
The Institute of Cancer Research (3)
Faculty of Biology, University of Freiburg, Freiburg, Germany (3)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (3)
Head of the Curie Institute Mass Spectrometry Platform (3)
Head of Proteomics (3)
Moffitt Cancer Center Tampa, FL (2)

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Virus-induced codon-specific reprogramming to favor viral RNA translation

Recent evidence indicates that codon usage bias regulates gene expression. How viruses, such as the emerging mosquito-borne Chikungunya virus (CHIKV), express their genomes at high levels despite an enrichment in rare codons remains a puzzling question. Using ribosome footprinting, here we analysed ...

2025-06-16 | MTBLS2443 | MetaboLights

Characterizations of HSP90-interacting complex in renal cells using tandem affinity purification and its potential role in kidney stone formation

Heat shock protein 90 (HSP90) is a highly abundant molecular chaperone that interacts with many other intracellular proteins to regulate various cellular processes. However, compositions of the HSP90-interacting complex remain underinvestigated. This study thus aimed to characterize such complex in ...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2018-12-17 | MSV000083252 | MassIVE

Enzymatic Site-specific Biotinylation Enables Analysis of RNA-protein Interactions and Enrichment of Cellular RNA

The importance of RNA in regulating cellular processes has generated tremendous interest in methods to reliably characterize RNAs and their interactions within cells. Existing methodologies rely on noncovalent interactions to facilitate RNA affinity purification, hindering the purification of less a...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2020-03-13 | MSV000085100 | MassIVE

MS2-affinity purification coupled with RNA sequencing (MAPS) reveals S. aureus RsaG sRNA targetome

PRJNA734607 | ENA

MS2-affinity purification coupled with RNA sequencing (MAPS) revealed MicF sRNA targetome.

PRJNA453155 | ENA

MS2-affinity purification coupled with RNA sequencing (MAPS) reveals S. aureus RsaI sRNA targetome

PRJNA503392 | ENA

MS for RNA binding preteins in tapasin 3'UTR

Using affinity purification for the detection of RNA-binding proteins in tapasin 3'UTR

ORGANISM(S): Homo sapiens (Human)

2025-05-06 | PXD045056 | Pride

Tapasin 3'utr

Affinity purification of ribosomes and associated RNAs from stress-treated cells using tagged Rpl16a and Rpl16b

This SuperSeries is composed of the following subset Series: GSE13653: Affinity purification of ribosomes and associated RNAs from stress-treated cells GSE13654: Affinity purification of ribosomes and associated RNAs using tagged Rpl16a and Rpl16b Refer to individual Series

ORGANISM(S): Saccharomyces cerevisiae

2010-06-25 | E-GEOD-13682 | biostudies-arrayexpress

MS2-affinity purification coupled with RNA sequencing (MAPS) reveals S. aureus IsrR sRNA targetome

PRJNA1258230 | ENA

MS2-affinity purification coupled with RNA sequencing (MAPS) reveals S. aureus RsaC sRNA targetome

PRJNA528653 | ENA

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