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Transcriptomics
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Other
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Organisms
Homo sapiens
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Mus musculus
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Rhizobium leguminosarum
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Drosophila melanogaster
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Saccharomyces cerevisiae
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Caenorhabditis elegans
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Rattus norvegicus
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Bacillus amyloliquefaciens
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Arabidopsis thaliana
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Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
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Bacteria
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Mycobacterium tuberculosis
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mixed sample
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Oncorhynchus mykiss
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Pseudomonas aeruginosa
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Danio rerio
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human lung metagenome
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Clostridium perfringens str. 13
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uncultured bacterium
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Macaca mulatta
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Organisms
Homo sapiens
(39)
Drosophila melanogaster
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Escherichia coli
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Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
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Streptococcus pneumoniae D39
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Saccharomyces cerevisiae
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Paramyxoviridae
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Microchloropsis gaditana
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Escherichia coli str. K-12 substr. MG1655
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metagenome
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Repository
biostudies-arrayexpress
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ENA
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pride
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Disease
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Healthy donor tissue
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Malignant neoplasm of ovary
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Technology Type
Mass Spectrometry
(10)
Affinity purification coupled with mass spectrometry proteomics
(5)
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(3)
Bottom-up proteomics
(2)
Chemical cross-linking coupled with mass spectrometry proteomics
(2)
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(2)
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(1)
Instrument Platform
Illumina HiSeq 2000
(17)
Illumina NovaSeq 6000
(10)
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(8)
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Illumina MiSeq
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(2)
BAS-5000 [FUJIFILM]
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(2)
Illumina Genome Analyzer IIx
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Chemostat
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DNA Microarray Scanner BA [Agilent Technologies]
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10X chemistry 3' v3
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Maxwell 16, Promega
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HiScan, Illumina
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DNA 7500 Bioanalyzer Chips
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BioChipReader
(1)
PCR machine; AMPure XP beads; TruSeq Stranded mRNA stranded prep. kit
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PCR machine; Superscript II polymerase Kit (Invitrogen); PCR machine; AMPure XP beads; TruSeq stranded mRNA sample prep kit.; TruSeq Stranded mRNA stranded prep. kit
(1)
Centrifuge 5424R (Eppendorf); miRNeasy Mini Kit (Qiagen); TURBO^TM DNase (Ambion); Bioanalyser (Agilent)
(1)
Centrifuge 5424R (Eppendorf); RNAprotect Bacteria Reagent (Qiagen); Cell culture dish (Nunc)
(1)
Centrifuge 5424R (Eppendorf); RNAprotect Bacteria Reagent (Qiagen)
(1)
PCR machine; MICROBExpress kit (Ambion); TruSeq Stranded mRNA stranded prep. kit
(1)
Publication Date
2010
(81)
2014
(51)
2012
(50)
2013
(49)
2011
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2008
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2009
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2015
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2007
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2006
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First Public Date
2014
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2026
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2015
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2016
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Classification
bacteria
(10)
viruses
(1)
Study type
Transcription profiling by array
(253)
RNA-seq of coding RNA
(64)
Other
(28)
ChIP-seq
(25)
ChIP-chip by array
(22)
DNA-seq
(11)
Transcription profiling by RT-PCR
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CUT&RUN
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ChIP-chip by tiling array
(7)
Methylation profiling by array
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RNA-seq of coding RNA from single cells
(7)
Methylation profiling by high throughput sequencing
(7)
RNA-seq of non coding RNA
(7)
Unknown experiment type
(6)
Comparative genomic hybridization by array
(6)
Transcription profiling by tiling array
(4)
Cell line - High-throughput sequencing
(3)
RNA-seq of total RNA
(3)
Genotyping by array
(2)
ATAC-seq
(2)
GRO-seq
(1)
Human - High-throughput sequencing
(1)
High-throughput sequencing
(1)
Human - One-color microarray
(1)
RNAi profiling by array
(1)
Spatial transcriptomics by high-throughput sequencing
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RIP-seq
(1)
MicroRNA profiling by array
(1)
Release Date
2010
(95)
2013
(66)
2012
(64)
2014
(62)
2011
(53)
2016
(49)
2015
(46)
2008
(45)
2022
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2009
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2021
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2023
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2020
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2019
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2024
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2007
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2006
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2018
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2025
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2017
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2005
(12)
2026
(10)
2004
(9)
2003
(3)
2000
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2001
(2)
1998
(2)
2002
(1)
Lab affiliation
Centre for Cancer Cell & Molecular Biology Barts Cancer Institute Queen Mary University of London Charterhouse Square London EC1M 6BQ U.K.
(3)
1 Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada 2 Li Ka Shing Institute of Virology, University of Alberta, Edmonton, AB, Canada
(1)
Department of Human Genetics, Leiden University Medical Center, The Netherlands
(1)
Department of Structural Cell Biology, Max Planck Institute of Biochemistry, Martinsried/Munich, D-82152, Germany
(1)
Eppley Institute for Research in Cancer University of Nebraska Medical Center
(1)
Functional Proteomics Lab, Life Sciences Dept. University of Siena, Siena, Italy
(1)
Institut Curie, CNRS, UMR 144, 26 rue d’Ulm, 75005 Paris, France
(1)
Institute for Cardiovascular Physiology, Faculty of Medicine, Goethe-University; Frankfurt am Main, Germany
(1)
Tags
pathogen
(11)
pathogen:bacterium
(10)
xref:PubMed:38662543
(5)
xref:PubMed:22378147
(3)
xref:PubMed:41385330
(3)
xref:PubMed:38898279
(2)
xref:PubMed:36646931
(2)
xref:PubMed:21679412
(2)
xref:PubMed:22816769
(2)
xref:PubMed:20604919
(2)
xref:PubMed:22530001
(2)
xref:PubMed:41551726
(1)
xref:PubMed:34698500
(1)
xref:PubMed:34706246
(1)
xref:PubMed:32601068
(1)
xref:PubMed:16723463
(1)
xref:PubMed:34544281
(1)
xref:PubMed:26951610
(1)
xref:PubMed:29950518
(1)
xref:PubMed:39887213
(1)
xref:PubMed:35689636
(1)
xref:PubMed:21906392
(1)
xref:PubMed:22375143
(1)
xref:PubMed:28092691
(1)
xref:PubMed:27521279
(1)
xref:PubMed:28725665
(1)
xref:PubMed:28388445
(1)
xref:PubMed:24386457
(1)
xref:PubMed:30181174
(1)
xref:PubMed:24983371
(1)
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The RGG/RG motif of AUF1 isoform p45 is a key modulator of the protein's RNA chaperone and RNA annealing activities.
Not available
S-EPMC6550787
|
biostudies-literature
Cite
The RNA annealing mechanism of the HIV-1 Tat peptide: conversion of the RNA into an annealing-competent conformation.
Not available
S-EPMC3105384
|
biostudies-literature
Cite
A 100-kD complex of two RNA-binding proteins from mitochondria of Leishmania tarentolae catalyzes RNA annealing and interacts with several RNA editing components.
Not available
S-EPMC1370371
|
biostudies-literature
Cite
Hfq proximity and orientation controls RNA annealing.
Not available
S-EPMC3458560
|
biostudies-literature
Cite
Light-Triggered RNA Annealing by an RNA Chaperone.
Not available
S-EPMC4478220
|
biostudies-literature
Cite
Human mitochondrial helicase Twinkle has RNA binding, annealing, and strand-exchange activities.
Not available
S-EPMC12820530
|
biostudies-literature
Cite
Characterization of the kinetics of RNA annealing and strand displacement activities of the E. coli DEAD-box helicase CsdA.
Not available
S-EPMC3590231
|
biostudies-literature
Cite
Human RPL7 and DDX21 interact with HTLV-1 Gag and enhance tRNA<sup>Pro</sup> primer annealing to genomic RNA.
Not available
S-EPMC12338668
|
biostudies-literature
Cite
Repetitive RNA unwinding by RNA helicase A facilitates RNA annealing.
Not available
S-EPMC4117756
|
biostudies-literature
Cite
The binding of Class II sRNA MgrR to two different sites on matchmaker protein Hfq enables efficient competition for Hfq and annealing to regulated mRNAs.
Not available
S-EPMC6239178
|
biostudies-literature
Cite
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