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Unknown
(1853)
Transcriptomics
(664)
Genomics
(388)
Proteomics
(27)
Metabolomics
(18)
Other
(11)
Organisms
Homo sapiens
(453)
Mus musculus
(154)
Rattus norvegicus
(28)
Danio rerio
(24)
Drosophila melanogaster
(11)
Gallus gallus
(8)
Saccharomyces cerevisiae
(5)
Daphnia magna
(4)
Bos taurus
(4)
Triticum aestivum
(4)
Canis lupus familiaris
(4)
synthetic construct
(4)
Burkholderia cenocepacia
(3)
Sus scrofa
(3)
Arabidopsis thaliana
(3)
Chlorocebus sabaeus
(3)
Schistosoma mansoni
(3)
Raphidocelis subcapitata
(2)
Cricetulus griseus
(2)
Staphylococcus aureus
(2)
Hordeum vulgare
(2)
Ovis aries
(2)
Caenorhabditis elegans
(2)
Acinetobacter baumannii AB5075
(2)
Triticum turgidum
(1)
Scyliorhinus canicula
(1)
Phocaeicola vulgatus
(1)
Lemna minor
(1)
Canis lupus
(1)
Litomosoides sigmodontis
(1)
Organisms
Homo sapiens
(142)
Mus musculus
(81)
Mycobacterium tuberculosis
(7)
Rattus norvegicus
(3)
Saccharomyces cerevisiae
(2)
Drosophila melanogaster
(2)
Mustela putorius furo
(1)
Cricetulus griseus
(1)
Schistosoma mansoni
(1)
Acinetobacter baumannii AB5075
(1)
Chlorocebus sabaeus
(1)
Mycobacterium tuberculosis H37Rv
(1)
Macaca mulatta
(1)
Macaca fascicularis
(1)
Escherichia coli str. K-12 substr. MG1655
(1)
Influenza A virus
(1)
Pseudomonas aeruginosa PAO1
(1)
Gallus gallus
(1)
Severe acute respiratory syndrome coronavirus 2
(1)
Canis lupus familiaris
(1)
Sus scrofa
(1)
Danio rerio
(1)
Repository
biostudies-arrayexpress
(571)
ENA
(300)
geo
(124)
EGA
(71)
pride
(21)
MetaboLights
(18)
MassIVE
(4)
iProX
(1)
jPOST
(1)
Tissue
Epithelial cell
(5)
Cell culture
(3)
Fibroblast
(2)
B-cell lymphoma/leukemia 11B
(1)
Blood cell
(1)
Blood plasma
(1)
Breast cancer cell
(1)
Heart
(1)
Hepatocyte
(1)
Liver
(1)
Lung epithelial cell differentiation
(1)
Primary cell
(1)
Skeletal muscle tissue
(1)
Spore
(1)
Disease
Normal
(3)
Rheumatoid arthritis
(2)
Breast cancer
(2)
HPV positive
(1)
Dermal neurofibroma
(1)
Invasive pituitary adenoma
(1)
Burkitt lymphoma
(1)
Coronary artery disease
(1)
Acute promyelocytic leukemia
(1)
Lung cancer
(1)
Nodal peripheral T-cell Lymphoma
(1)
B-cell acute lymphoblastic leukemia
(1)
COVID-19
(1)
Cervix carcinoma
(1)
Disease free
(1)
Hepatocellular carcinoma
(1)
Influenza
(1)
Technology Type
Mass Spectrometry
(21)
Mass spectrometry
(14)
Shotgun proteomics
(11)
Affinity purification coupled with mass spectrometry proteomics
(5)
Mass spectrometry assay
(3)
RNA mass spectrometry
(3)
ILLUMINA, Illumina HiSeq 2500
(2)
Illumina MiSeq, Illumina HiSeq 2500, ILLUMINA
(1)
NextSeq 500, ILLUMINA
(1)
Illumina HiSeq 4000, Illumina HiSeq 2500, ILLUMINA
(1)
Aperio
(1)
Illumina HiSeq 2000, NextSeq 500, ILLUMINA
(1)
Illumina 2.5M, Illumina HiSeq 2000
(1)
Illumina HiSeq 2000
(1)
Illumina MiSeq
(1)
Illumina HiSeq 2000, ILLUMINA
(1)
NMR spectroscopy
(1)
Bottom-up proteomics
(1)
Data-dependent acquisition
(1)
Instrument Platform
Illumina NovaSeq 6000
(95)
Illumina HiSeq 4000
(21)
NextSeq 500
(21)
NextSeq 2000
(17)
Illumina NovaSeq X
(14)
Illumina HiSeq 2000
(9)
Illumina HiSeq 2500
(8)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB
(7)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel).
(6)
DNBSEQ-G400
(6)
NextSeq 550
(6)
See manuscript
(5)
DNBSEQ-T7
(5)
FastPrep‑24 homogenizer (MP Biomedicals)
(4)
Agilent High resolution C scanner
(4)
Illumina MiSeq
(4)
Controlled-environment growth chamber (short-day; 8 h light / 16 h dark)
(2)
FastPrep‑24 homogenizer (MP Biomedicals), operated at 5 m/s for 10 seconds.
(2)
None
(2)
NA
(2)
N/A
(2)
Illumina
(2)
IPK PhenoSphere
(1)
HISAT2, TOPHAT2
(1)
Qubit 4 Fluorometer
(1)
Qiagen RNEasy Mini ki
(1)
BD FACSAriaIIu cell sorter
(1)
Chromium Controller, 10x Genomics and Chromium X, 10x Genomics
(1)
Chromium Controller, 10x Genomics and Chromium X, 10x Genomics
(1)
Cell culture
(1)
Publication Date
2026
(129)
2025
(87)
2024
(56)
2010
(56)
2012
(48)
2013
(46)
2011
(42)
2014
(33)
2016
(32)
2015
(32)
2023
(31)
2021
(28)
2008
(25)
2022
(21)
2020
(16)
2009
(15)
2018
(13)
2007
(12)
2017
(8)
2019
(4)
2006
(3)
2005
(3)
CHEBI ID
CHEBI:15891
(6)
CHEBI:16027
(6)
CHEBI:30769
(6)
CHEBI:17115
(5)
CHEBI:16668
(5)
CHEBI:15611
(5)
CHEBI:18019
(5)
CHEBI:16015
(5)
CHEBI:17196
(5)
CHEBI:15428
(5)
CHEBI:30915
(5)
CHEBI:16919
(5)
CHEBI:15354
(5)
CHEBI:15603
(5)
CHEBI:17895
(5)
CHEBI:17295
(5)
CHEBI:16828
(5)
CHEBI:16927
(4)
CHEBI:16344
(4)
CHEBI:15356
(4)
CHEBI:17126
(4)
CHEBI:16708
(4)
CHEBI:16411
(4)
CHEBI:16704
(4)
CHEBI:16857
(4)
CHEBI:17750
(4)
CHEBI:27389
(4)
CHEBI:18183
(4)
CHEBI:16958
(4)
CHEBI:18132
(4)
Metabolite Name
Taurine
(5)
AMP
(4)
O-Phosphoethanolamine
(4)
Citrulline
(4)
L-Asparagine
(4)
Citric acid
(4)
Succinic acid
(4)
Sarcosine
(4)
L-Tryptophan
(4)
Guanosine
(4)
Uridine
(4)
Creatine
(4)
L-Leucine
(4)
L-Tyrosine
(4)
Inosine
(4)
Hypoxanthine
(4)
D-Glucose 1-phosphate
(3)
Folic acid
(3)
Hypotaurine
(3)
Leucine
(3)
N-Acetyl-D-glucosamine
(3)
3-Methyl-2-oxovaleric acid
(3)
Glycine
(3)
Uracil
(3)
Valine
(3)
Betaine
(3)
ADP
(3)
Carnitine
(3)
Maleic acid
(3)
Shikimic acid
(3)
First Public Date
2024
(45)
2026
(42)
2025
(42)
2022
(32)
2023
(31)
2021
(27)
2014
(19)
2020
(16)
2018
(12)
2017
(12)
2019
(9)
2015
(6)
2013
(4)
2016
(3)
Classification
bacteria
(11)
viruses
(2)
helminths
(1)
Study type
Transcription profiling by array
(286)
RNA-seq of coding RNA
(155)
RNA-seq of coding RNA from single cells
(35)
RNA-seq of total RNA
(20)
Unknown experiment type
(12)
Comparative genomic hybridization by array
(10)
RNA-seq of non coding RNA
(8)
Animal - One-color microarray
(4)
Other
(4)
Methylation profiling by array
(4)
Spatial transcriptomics by high-throughput sequencing
(3)
Ribo-seq
(3)
Animal - High-throughput sequencing
(2)
Transcription profiling by RT-PCR
(2)
MicroRNA profiling by high throughput sequencing
(2)
Single nucleus RNA sequencing
(2)
ChIP-seq
(2)
MicroRNA profiling by array
(2)
Transcription profiling by MPSS
(1)
GRO-seq
(1)
ChIP-chip by tiling array
(1)
One-color microarray
(1)
Human - Single-cell sequencing
(1)
Human - High-throughput sequencing
(1)
Cell line - High-throughput sequencing
(1)
Transcription profiling by tiling array
(1)
ATAC-seq
(1)
RIP-seq
(1)
DNA-seq
(1)
Methylation profiling by high throughput sequencing
(1)
Release Date
2025
(299)
2022
(254)
2024
(243)
2021
(240)
2023
(235)
2020
(138)
2026
(125)
2019
(104)
2018
(85)
2016
(81)
2014
(79)
2017
(78)
2015
(76)
2010
(75)
2013
(74)
2012
(74)
2011
(64)
2008
(31)
2009
(30)
2007
(16)
2005
(9)
2006
(6)
2003
(4)
2004
(1)
2002
(1)
2001
(1)
1998
(1)
Lab affiliation
Novartis Inst. for BioMedical Research
(3)
Associate Professor
(1)
Cornell University
(1)
Department for Molecular and Applied Microbiology Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena (Leibniz-HKI) Jena, Germany
(1)
Department of Chemistry, University of California, Riverside, California, 92521-0403, USA
(1)
Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel
(1)
Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, United States
(1)
Department of Molecular and Applied Microbiology Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena Leibniz-HKI Adolf-Reichwein-Str. 23 Jena, Germany
(1)
Immunology Department, Mossakowski Medical Research Institute, Polish Academy of Sciences, Warsaw, Poland
(1)
Microbiology Department at the Icahn School of Medicine at Mount Sinai
(1)
New England Biolabs, Inc, 240 County Rd, Ipswich, MA, 01938, USA.
(1)
New England Biolabs, RNA Division
(1)
STORM Therapeutics Limited Cambridge United Kingdom
(1)
STORM Therapeutics Limited, Cambridge, United Kingdom
(1)
School of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332
(1)
Sun Yat-sen University Cancer Center, Department of Pathology
(1)
The University of Texas MD Anderson Cancer Center
(1)
University of North Carolina, Chapel Hill. Department of Environmental Sciences and Engineering (ENVR; Institute for Environmental Health Solutions (IEHS; UNC Superfund Research Program (UNC-SRP; Center for Environmental Medicine and Lung Biology (CEMALB; Curriculum in Toxicology & Environmental Medicine (CiTEM)
(1)
University of Toronto Translational Biology and Engineering Program, Ted Rogers Centre for Heart Research
(1)
Tags
pathogen
(14)
pathogen:bacterium
(11)
xref:PubMed:34873198
(8)
xref:PubMed:34977849
(8)
xref:PubMed:16273092
(4)
xref:PubMed:35217626
(3)
xref:PubMed:32417679
(3)
xref:PubMed:39604360
(3)
xref:PubMed:31213486
(3)
xref:PubMed:40624726
(3)
xref:PubMed:37647630
(2)
xref:PubMed:36043458
(2)
xref:PubMed:41066574
(2)
xref:PubMed:27935476
(2)
xref:PubMed:34232320
(2)
xref:PubMed:39332586
(2)
xref:PubMed:40592341
(2)
xref:PubMed:39736815
(2)
xref:PubMed:28811345
(2)
xref:PubMed:37906280
(2)
xref:PubMed:38942029
(2)
xref:PubMed:28167506
(2)
xref:PubMed:39422453
(2)
xref:PubMed:39495206
(2)
xref:PubMed:38897168
(2)
xref:PubMed:34535664
(2)
xref:PubMed:42418568
(2)
xref:PubMed:39448563
(2)
xref:PubMed:38512964
(2)
covid19
(2)
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Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics
Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics
PRJNA723762
|
ENA
Cite
RNA-based medicine: from molecular mechanisms to therapy.
Not available
S-EPMC10620767
|
biostudies-literature
Cite
RNAi-Based Therapeutics and Novel RNA Bioengineering Technologies.
Not available
S-EPMC9827509
|
biostudies-literature
Cite
Emerging Progress of RNA-Based Antitumor Therapeutics.
Not available
S-EPMC10321292
|
biostudies-literature
Cite
RNA-based therapeutics: an overview and prospectus.
Not available
S-EPMC9308039
|
biostudies-literature
Cite
RNA-based therapeutics: current progress and future prospects.
Not available
S-EPMC3269031
|
biostudies-literature
Cite
Multimeric RNAs for efficient RNA-based therapeutics and vaccines.
Not available
S-EPMC8970614
|
biostudies-literature
Cite
RNA-Based Therapeutics: From Antisense Oligonucleotides to miRNAs.
Not available
S-EPMC7016530
|
biostudies-literature
Cite
RNA toehold switch-based reporter assay to assess bacterial uptake of antisense oligomers.
Not available
S-EPMC12017328
|
biostudies-literature
Cite
RNA-Based Therapeutics: Current Developments in Targeted Molecular Therapy of Triple-Negative Breast Cancer.
Not available
S-EPMC8537780
|
biostudies-literature
Cite
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