Rnase z - OmicsDI

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Transcriptomics (758)
Unknown (432)
Proteomics (281)
Genomics (202)
Metabolomics (6)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (336)
Mus musculus (234)
Drosophila melanogaster (160)
Arabidopsis thaliana (91)
Saccharomyces cerevisiae (38)
Caenorhabditis elegans (35)
Escherichia coli (28)
Rattus norvegicus (26)
Mycobacterium tuberculosis (12)
Schizosaccharomyces pombe (10)
Gallus gallus (8)
Zea mays (7)
Plasmodium falciparum 3D7 (6)
Vitis vinifera (6)
Oryza sativa (6)
Saccharomyces cerevisiae SK1 (5)
synthetic construct (5)
Sus scrofa (5)
Equus caballus (4)
Hordeum vulgare (4)
Candida albicans (4)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (3)
Camponotus floridanus (3)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (3)
Zymomonas mobilis (3)
Bombyx mori (3)
Macaca mulatta (3)
Brassica napus (3)
Oryza sativa Japonica Group (3)
Danio rerio (3)

Organisms

Homo sapiens (4)
Mus musculus (4)
Manduca sexta (1)
Caenorhabditis elegans (1)
Arabidopsis thaliana (1)
Saccharomyces cerevisiae (1)

Repository

biostudies-arrayexpress (943)
pride (272)
ENA (15)
geo (8)
MetaboLights (6)
iProX (5)
MassIVE (2)
PanoramaPublic (1)
PeptideAtlas (1)

Tissue

Cell culture (84)
Brain (15)
Epithelial cell (11)
Fibroblast (9)
Kidney (9)
Permanent cell line cell (9)
Cell suspension culture (8)
Embryo (7)
HeLa cell (7)
T cell (7)
Bone marrow (6)
Liver (6)
Embryonic stem cell (5)
B cell (4)
Blood cell (4)
Lung (4)
Plant cell (4)
Heart (3)
Photosynthetic cell (3)
Whole body (3)
Colon (2)
Endothelial cell (2)
Hepatocyte (2)
Kidney cell (2)
Seedling (2)
Skin (2)
Stem cell (2)
C2C12 cell (1)
Flp-In-T-REx cell (1)
HEK-293T cell (1)

Disease

Colon cancer (7)
Disease free (5)
Progeria (5)
Normal (4)
Breast cancer (4)
Acute leukemia (3)
Cervix carcinoma (2)
Huntington Disease (2)
Malignant neoplasm of ovary (2)
High bone mineral density (1)
No lesions (1)
Challenged with Pieris rapae larvae (1)
IV (1)
Primary tumor (1)
Rheumatoid arthritis (1)
Colonic adenocarcinoma (1)
Chronic myelogenous leukemia (1)
Reference (1)
Hypertensive (1)
Prostate carcinoma (1)
Bone giant cell tumor (1)
Brain glioblastoma multiforme (1)
Cancer (1)
Cardiovascular system disease (1)
Chronic myeloid leukemia (1)
Dilated cardiomyopathy (1)
Glioblastoma (1)
Kidney cancer (1)
Lung adenocarcinoma (1)
Melanoma (1)

Technology Type

Mass Spectrometry (272)
Shotgun proteomics (107)
Affinity purification coupled with mass spectrometry proteomics (70)
Bottom-up proteomics (49)
Data-dependent acquisition (40)
Gel-based experiment (26)
Chemical cross-linking coupled with mass spectrometry proteomics (16)
RNA mass spectrometry (12)
Data-independent acquisition (10)
SWATH MS (5)
Mass spectrometry (4)
Top-down proteomics (4)
All-ion fragmentation (3)
HDMSE (3)
MSE (3)
SRM/MRM (3)
Mass spectrometry assay (2)
Affinity proteomics (2)
DiaPASEF (1)
Mass spectrometry imaging (1)

Instrument Platform

Illumina NovaSeq 6000 (25)
NextSeq 500 (14)
Illumina HiSeq 2500 (8)
Illumina HiSeq 4000 (7)
Illumina HiSeq 2000 (5)
ScanArray scanning hardware (4)
ScanArray 4000 [PerkinElmer] (4)
Axon- GenePix4000B (4)
NextSeq 550 (4)
Affymetrix Fluidics Station 400 (3)
Illumina MiSeq (3)
Illumina HiSeq 3000 (3)
Axon GenePix 4000A scanning hardware (2)
ScanArray 5000 [PerkinElmer] (2)
Illumina Genome Analyzer IIx (2)
Bioanalyser (2)
Illumina NovaSeq X (2)
NextSeq 2000 (2)
Illumina HiSeq 1000 (2)
HiSeq X Ten (2)
Illumina HiSeq 1500 (2)
DELL PRECISION 7500 (1)
FastPrep-24 5G bead beater, Qubit Fluorometer (1)
12 well TC-treated plate, LETs buffer, dry ice (1)
PromethION (1)
Illumina Genome Analyser II (1)
10X Chromium Controller (1)
DNA 7500 Bioanalyzer Chips (1)
G2565BA DNA microarray scanner [Agilent Technologies] (1)
(Make:PerkinElmer,Model:ScanArray 4000XL) (1)

Publication Date

2013 (214)
2010 (109)
2015 (90)
2012 (90)
2014 (84)
2011 (81)
2026 (66)
2009 (48)
2024 (47)
2021 (47)
2023 (46)
2016 (46)
2025 (41)
2022 (40)
2007 (37)
2008 (35)
2020 (33)
2018 (19)
2019 (17)
2017 (15)
2006 (14)
2005 (9)
2004 (9)
2003 (1)

CHEBI ID

CHEBI:17580 (1)
CHEBI:28996 (1)
CHEBI:47856 (1)
CHEBI:5331 (1)
CHEBI:88528 (1)

Metabolite Name

Asparagine (2)
Azelaic acid (2)
Citric acid (2)
Cyromazine (2)
Cytidine (2)
Deoxycholic acid (2)
L-Tryptophan (2)
L-Tyrosine (2)
N2,N2-Dimethylguanosine (2)
Pyroglutamic acid (2)
Sebacic acid (2)
Sorbitol (2)
Tetradecanedioic acid (2)
Theophylline (2)
Uric acid (2)
Uridine (2)
Xanthosine (2)
(+)-Gallocatechin (1)
(+)-cis-abscisic aldehyde (1)
(-)-Abscisic acid (1)
(-)-Bornesitol (1)
(-)-Epigallocatechin 3-(3-methyl-gallate) (1)
(1R,2R)-Isocitric acid (1)
(1S,2S,4S,5R)-1,8-Epoxy-p-menthane-2,5-diol (1)
(1S,3R)-1-Aminocyclopentane-1,3-dicarboxylic acid (1)
(1aalpha,2beta,3alpha,11calpha)-1a,2,3,11c-Tetrahydro-6,11-dimethylbenzo[6,7]phenanthro[3,4-b]oxirene-2,3-diol (1)
(2'E,4'Z,8E)-Colneleic acid (1)
(2,2-Diethoxyethyl)benzene (1)
(2-Amino-4,5,6,7-tetrahydro-1-benzothien-3-yl)(4-methylphenyl)methanone (1)
(2-trans-6-trans)-farnesoate (1)

First Public Date

2018 (4)
2024 (3)
2026 (2)
2023 (2)
2025 (1)
2021 (1)
2020 (1)
2013 (1)

Modification

2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
-17.026549 (1)
15.994915 (1)
42.010565 (1)
4x(2)H labeled dimethylated residue (1)

Study type

Transcription profiling by array (441)
ChIP-seq (178)
RNA-seq of coding RNA (137)
ChIP-chip by tiling array (56)
RNA-seq of non coding RNA (30)
Other (21)
ChIP-chip by array (11)
RNA-seq of coding RNA from single cells (8)
Unknown experiment type (6)
Transcription profiling by tiling array (6)
Comparative genomic hybridization by array (5)
Methylation profiling by array (4)
RNA-seq of total RNA (4)
DNA-seq (3)
Plant - High-throughput sequencing (2)
High-throughput sequencing (2)
Animal - High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
Transcription profiling by RT-PCR (2)
Single nucleus RNA sequencing (2)
MicroRNA profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by high throughput sequencing (1)
Baseline (1)
MNase-seq (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Genotyping by array (1)
CLIP-seq (1)
Hi-C (1)

Release Date

2013 (225)
2010 (118)
2015 (102)
2012 (97)
2014 (96)
2011 (89)
2022 (69)
2021 (60)
2016 (55)
2023 (53)
2025 (51)
2009 (50)
2008 (41)
2007 (40)
2024 (37)
2020 (35)
2017 (32)
2018 (31)
2019 (30)
2006 (16)
2026 (15)
2005 (14)
2004 (11)
2003 (3)
1998 (2)
2002 (1)
2000 (1)
1999 (1)

Lab affiliation

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, United States (4)
Department of Proteomics and Signal Transduction, Max-Planck-Institute of Biochemistry, Munich, Germany (4)
Centre for Cancer Cell & Molecular Biology Barts Cancer Institute Queen Mary University of London Charterhouse Square London EC1M 6BQ U.K. (3)
European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany. (3)
Institute for Cardiovascular Regeneration, Centre for Molecular Medicine, Goethe University Frankfurt am Main, Germany (3)
Molecular and Cell Biology Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey Pines Rd, La Jolla, CA 92037 (3)
STORM Therapeutics Limited, Cambridge, United Kingdom (3)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (2)
Boston University Goldman School of Dental Medicine Boston MA, 02118, USA (2)
Daegu Catholic University School of Medicine (2)
Department II of Internal Medicine and Center for Molecular Medicine Cologne, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany; CECAD, University of Cologne, Faculty of Medicine and University Hospital Cologne, Germany (2)
Department of Biochemistry and Biotechnology, University of Thessaly, Biopolis, 41500 Larissa, Greece (2)
Laboratory of Molecular Basis of Synaptic Plasticity Centre of New Technologies, University of Warsaw (2)
Max Planck Unit for the Science of Pathogens Charitéplatz 1,D-10117 Berlin, Germany (2)
Max-Planck-Institute for Multidisciplinary Sciences Bioanalytical Mass Spectrometry Group Am Fassberg 11 D-37077 Goettingen, Germany University Medical Center Goettingen Bioanalytics Institute for Clinical Chemistry Robert Koch Strasse 40 D-37075 Goettingen, Germany (2)
New England Biolabs (2)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (2)
STORM Therapeutics Limited Cambridge United Kingdom (2)
Sencond Military Medical University (2)
Sichuan University (2)
State Key Laboratory of Microbial Metabolism (2)
University of Louisville, Department of Chemistry, Louisville, KY 40208, USA (2)
University of Parma, Department of Medicine and Surgery, Laboratory of Translational Hematology (2)
1 Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands 2 Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
1) Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, UPS, Toulouse, France 2) Infrastructure nationale de protéomique, ProFI, FR 2048, Toulouse, France (1)
1) Structural and Computational Biology Unit, EMBL Heidelberg, Meyerhofstraße 1, 69117, Heidelberg, Germany 2) Chair of Biochemistry IV, Biophysical Chemistry, University of Bayreuth, Bayreuth, Germany (1)
AG Schoen Institute for Hygiene and Microbiology Würzburg, Germany (1)
Aarhus University Institute of Molecular Biology and Genetics Universitetsbyen 81 8000 Aarhus Denmark (1)
Assistant professor, School of Biological Sciences, Seoul National University (1)
BRIC, University of Copenhagen, Denmark. (1)

1685 Results

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