Rochester C C - OmicsDI

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Unknown (11402)
Proteomics (167)
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Organisms

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Organisms

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CHEBI ID

CHEBI:113542 (1)
CHEBI:15384 (1)
CHEBI:15864 (1)
CHEBI:16148 (1)
CHEBI:16196 (1)
CHEBI:165229 (1)
CHEBI:165387 (1)
CHEBI:17242 (1)
CHEBI:172515 (1)
CHEBI:174089 (1)
CHEBI:174344 (1)
CHEBI:17620 (1)
CHEBI:17818 (1)
CHEBI:18123 (1)
CHEBI:18186 (1)
CHEBI:18211 (1)
CHEBI:185384 (1)
CHEBI:190128 (1)
CHEBI:190129 (1)
CHEBI:190130 (1)
CHEBI:190131 (1)
CHEBI:190132 (1)
CHEBI:190133 (1)
CHEBI:190134 (1)
CHEBI:22652 (1)
CHEBI:26938 (1)
CHEBI:28897 (1)
CHEBI:30768 (1)
CHEBI:30769 (1)
CHEBI:30794 (1)

Metabolite Name

2-methoxy-3-(1-methylpropyl) pyrazine (1)
4-methylheptadecane (1)
Alpha hydroxylauric acid (1)
Aminoadipic acid (1)
Ascorbic acid (1)
Capsaicin (1)
Capsiamide (1)
Dehydroascorbic acid (1)
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LPC 16:0 (1)
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LPC 18:2 (1)
Limonene (1)
Luteolin (1)
Malonic acid (1)
Moupinamide (1)
N-cis-feruloyltyramine (1)
N-heptadecane (1)
Nonadecane (1)
Norcapsaicin (1)
Oleic acid (1)
P-aminobenzaldehyde (1)
P-coumaric acid (1)
Pantothenic acid (1)
Tetrose (1)

IsPrivate

False (2)

First Public Date

2023 (5)
2014 (5)
2022 (3)
2021 (3)
2020 (3)
2025 (2)
2024 (2)
2019 (2)
2017 (2)
2026 (1)
2018 (1)

Classification

bacteria (2)
fungi (1)

Modelling Approach

Ordinary differential equation model (2)

Modification

2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)

Study type

Transcription profiling by array (29)
RNA-seq of coding RNA (8)
Comparative genomic hybridization by array (2)
Unknown experiment type (1)
Human - High-throughput sequencing (1)
CLIP-seq (1)

Release Date

2021 (1153)
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2023 (1087)
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2002 (7)
2000 (7)
1999 (7)
1998 (6)
1997 (2)

Lab affiliation

McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 USA (9)
Department of Laboratory Medicine and Pathology Mayo Clinic, Rochester, Minnesota 55905 United States (7)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota 55905, United States (7)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905, USA (6)
Department of Laboratory Medicine and Pathology, Mayo Clinic (5)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA (5)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205 USA (5)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205 (3)
Department of Biology, University of Pennsylvania (3)
Department of Laboratory Medicine and Pathology & Center for Individualized Medicine Mayo Clinic Rochester MN 55905, USA (3)
University of Pennsylvania, Department of Biology (3)
Department of Biology, University of Rochester (2)
Department of Laboratory Medicine and Pathology, Mayo Clinic, USA (2)
Institute of Plant Biology and Biotechnology, University of Muenster (2)
Professor Laboratory Medicine and Pathology Mayo Clinic, Rochester, MN, USA (2)
527 Miller Research Building 733 N. Broadway Baltimore, MD 21205 (1)
733 N. Broadway Room 527, Miller Research Building Baltimore MD 21205 USA (1)
9McKusick-Nathans Institute of Genetic Medicine, 10Departments of Biological Chemistry, and 11Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. (1)
Akhilesh Pandey, M.D, Ph.D. 527 Miller Research Building 733 N. Broadway Baltimore, MD 21205 (1)
Akhilesh Pandey, M.D., Ph.D. Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota 55905, United States (1)
Biochemistry and Molecular Biology, Munger Lab, University of Rochester, USA (1)
Biology Department, University of Rochester (1)
Cardiovascular Research Institute, University of California, San Francisco, San Francisco, CA Department of Physiology, University of California, San Francisco, San Francisco, CA Chan Zuckerberg Biohub, San Francisco, CA (1)
Cellzome A GSK Company, Heidelberg 69117, Germany (1)
Center for Musculoskeletal Research, Department of Orthopaedics & Rehabilitation, University of Rochester Medical Center, Rochester, NY, 14642 Department of Biomedical Engineering, University of Rochester, Rochester, NY, 14627 (1)
Center for RNA Biology: From Genome to Therapeutics Department of Biochemistry and Biophysics University of Rochester Medical Center Rochester, NY, 14642, USA (1)
Children's Hospital of Philadelphia 10-052 Colket Translational Research Bldg 3501 Civic Center Blvd Philadelphia, PA 19104 Office: 267-760-7684 (1)
Department of Biochemistry and Molecular Biology Department of Urology, Mayo clinic, Rochester MN, US (1)
Department of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, USA (1)
Department of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, USA. (1)

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SILAC analysis of ptp-3 knockout in C. elegans

A ptp-3 mutant and wildtype C. elegans were SILAC labeled and subjected to whole proteome analysis and phosphotyrosine enrichment.

ORGANISM(S): Caenorhabditis elegans

2016-12-14 | PXD003233 | Pride

Phosoproteomics C. elegans Silac

Comprehensive Structure-Activity Profiling of Micheliolide and its Targeted Proteome in Leukemia Cells via Probe-Guided Late-Stage C—H Functionalization

The plant-derived sesquiterpene lactone micheliolide was recently found to possess promising antileukemic activity, including the ability to target and kill leukemia stem cells. Efforts toward improving the biological activity of micheliolide and investigating its mechanism of action have been hinde...

ORGANISM(S): Homo sapiens (Human)

2021-09-10 | PXD024455 | Pride

Competitive pull-down Multi-probe proteomics Leukemia stem cells C-h functionalization Biocatalysis Sesquiterpene lactones

Reduction of leukemic burden via bone-targeted nanoparticle delivery of an inhibitor of C-chemokine (C-C motif) ligand 3 (CCL3) signaling.

Not available

S-EPMC8594422 | biostudies-literature

C. elegans Males Integrate Food Signals and Biological Sex to Modulate State-Dependent Chemosensation and Behavioral Prioritization.

Not available

S-EPMC7375905 | biostudies-literature

Prevention of pegfilgrastim-induced bone pain: a phase III double-blind placebo-controlled randomized clinical trial of the university of rochester cancer center clinical community oncology program research base.

Not available

S-EPMC3383174 | biostudies-literature