Rodriguez Alexander A

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Unknown (472)
Models (21)
Transcriptomics (11)
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Homo sapiens (11)
Mammalia (7)
Mus musculus (7)
Saccharomyces cerevisiae (5)
Cereibacter sphaeroides (1)
Eukaryota (1)
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Caenorhabditis elegans (1)

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BioModels (21)
biostudies-arrayexpress (11)
pride (4)
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Tissue

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Disease

Polycythemia due to hypoxia (1)

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Mass Spectrometry (4)
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Chemical cross-linking coupled with mass spectrometry proteomics (1)
SWATH MS (1)
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Instrument Platform

Illumina NovaSeq 6000 (2)
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UNIPROT ID/AC

O54910 (2)
O88351 (2)
O88522 (2)
P25799 (2)
Q60680 (2)
Q60778 (2)
Q9Z1E3 (2)
P04637 (1)
P05231 (1)
P08887 (1)
Q00987 (1)

ENSEMBL ID

ENSG00000135679 (1)
ENSG00000141510 (1)

CHEBI ID

CHEBI:33699 (1)
CHEBI:1148 (1)
CHEBI:15366 (1)
CHEBI:16449 (1)
CHEBI:16737 (1)
CHEBI:16919 (1)
CHEBI:17234 (1)
CHEBI:18064 (1)
CHEBI:18237 (1)
CHEBI:20067 (1)
CHEBI:24898 (1)
CHEBI:25017 (1)
CHEBI:25094 (1)
CHEBI:26271 (1)
CHEBI:27266 (1)
CHEBI:37684 (1)
CHEBI:42191 (1)
CHEBI:78320 (1)

Metabolite Name

2-Hydroxybutyrate (1)
3-Hydroxybutyrate (1)
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Acetate (1)
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Creatine (1)
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Mannose (1)
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Modelling Approach

Ordinary differential equation model (18)

Lab affiliation

Nanoparticle Systems Engineering Laboratory Department of Mechanical and Process Engineering ETH Zurich, Switzerland (2)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Auguste-Piccard-Hof 1, 8093 Zurich, Switzerland (1)
Mass Spectrometry Research and Support Group National Institute of Environmental Health Sciences 111 TW Alexander Drive MD F0-04 Research Triangle Park, North Carolina 27709 (1)

IsPrivate

False (21)

Model Flag

Non Kinetic (4)

Submitter Keywords

Immuno-oncology (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (5)
RNA-seq of coding RNA (2)
Transcription profiling by SAGE (1)
Spatial transcriptomics by high-throughput sequencing (1)
Other (1)
Single nucleus RNA sequencing (1)

Release Date

2024 (69)
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2019 (27)
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2008 (2)
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Down-Regulation of Hippocampal Genes Regulating Dopaminergic, GABAergic, and Glutamatergic Function Following Combined Neonatal Phencyclidine and Post-Weaning Social Isolation of Rats as a Neurodevelopmental Model for Schizophrenia.

Not available

S-EPMC5137279 | biostudies-literature

Infantile Alexander disease: spectrum of GFAP mutations and genotype-phenotype correlation.

Not available

S-EPMC1274357 | biostudies-literature

SAGE in Cultured Murine COC During Early Maturation

In cultured cumulus oocyte complexes (COC) FSH induces gene transcription required for germinal vesicle breakdown (GVBD). Experiments were performed to determine the critical period when gene transcription is required for GVBD and identify candidate mRNAs involved. Experiment I: murine COC were cult...

ORGANISM(S): Mus musculus

2006-08-31 | E-GEOD-5568 | biostudies-arrayexpress

External Laryngeal Tremor in Adult-Onset Alexander Disease: A Case Report

Not available

S-EPMC11249790 | biostudies-literature

J-Resolved 1H NMR 1D-Projections for Large-Scale Metabolic Phenotyping Studies: Application to Blood Plasma Analysis

1H nuclear magnetic resonance (NMR) spectroscopy-based metabolic phenotyping is now widely used for large-scale epidemiological applications. To minimize signal overlap present in 1D 1H NMR spectra, we have investigated the use of 2D J-resolved (JRES) 1H NMR spectroscopy for large-scale phenotyping ...

2018-07-23 | MTBLS540 | MetaboLights

Ratushny2012_SPF

This model is from the article: Asymmetric positive feedback loops reliably control biological responses Alexander V Ratushny, Ramsey A Saleem, Katherine Sitko, Stephen A Ramsey & John D Aitchison Mol Syst Biol. 2012 Apr 24;8:577. ...

2024-09-02 | BIOMD0000000418 | BioModels

Ratushny2012_ASSURE_I

2024-09-02 | BIOMD0000000420 | BioModels

Ratushny2012_ASSURE_II

2024-09-02 | BIOMD0000000421 | BioModels

Ratushny2012_NF

2024-09-02 | BIOMD0000000417 | BioModels

Ratushny2012_SPF_I

2024-09-02 | BIOMD0000000419 | BioModels