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Proteomics,MultiomicsDynamic profiling of the protein life cycle in response to pathogens
Jovanovic M,Rooney M, Mertins P, Przybylski D, Chevrier N, Satija R, Rodriguez EH, Fields AP, Schwartz S, Raychowdhury R, Mumbach M, Eisenhaure T, Rabani M, Gennert D, Lu D, Delorey T, Weissman JS, Carr SA, Hacohen N, Regev A, submitted 2015. Protein expression is regulated by production and degrada...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2015-01-15 | MSV000078994 | MassIVE
TranscriptomicsHypoxia
All mammalian cells need oxygen. Inadequate oxygen (hypoxia) triggers cellular responses for survival and the maintenance of homeostasis. A transcription factor, hypoxia-inducible factor (HIF), plays a central role in the hypoxia response; its activity is regulated by the oxygen-dependent degradatio...
ORGANISM(S): Homo sapiens 
2010-07-01 | E-GEOD-3537 | biostudies-arrayexpress
ProteomicsA regression-based analysis of ribosome-profiling data reveals a conserved complexity to mammalian translation
Alexander P. Fields, Edwin H. Rodriguez, Marko Jovanovic, Noam Stern-Ginossar, Brian J. Haas, Philipp Mertins, Raktima Raychowdhury, Nir Hacohen, Steven A. Carr, Nicholas T. Ingolia, Aviv Regev, and Jonathan S. Weissman.Molecular Cell 2015. A fundamental goal of genomics is to identify the complete ...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2015-10-30 | MSV000079361 | MassIVE
ModelsBai2003_G1phaseRegulation
This a model from the article: Theoretical and experimental evidence for hysteresis in cell proliferation. Bai S, Goodrich D, Thron CD, Tecarro E, Obeyesekere M. Cell Cycle. 2003 Jan-Feb;2(1):46-52. 12695688 , ...
2024-09-02 | BIOMD0000000242 | BioModels
MetabolomicsLactate controls cancer stemness and plasticity through epigenetic regulation.

Tumours arise from uncontrolled cell proliferation driven by mutations in genes that regulate stem cell renewal and differentiation. Intestinal tumours, however, retain some hierarchical organization, maintaining both cancer stem cells (CSCs) and cancer differentiated cells (CDCs). This heterogen...

2025-05-28 | MTBLS11849 | MetaboLights
UnknownMYC dosage compensation is mediated by miRNA-transcription factor interactions in aneuploid cancer.
Not available
S-EPMC8627999 | biostudies-literature
TranscriptomicsA regression-based analysis of ribosome-profiling data reveals a conserved complexity to mammalian translation
A fundamental goal of genomics is to identify the complete set of expressed proteins. Automated annotation strategies rely on assumptions about protein-coding sequences (CDSs), e.g., they are conserved, do not overlap, and exceed a minimum length. However, an increasing number of newly discovered pr...
ORGANISM(S): Mus musculus 
2015-12-03 | E-GEOD-74139 | biostudies-arrayexpress
UnknownDifferences in neutralizing antibody sensitivities and envelope characteristics indicate distinct antigenic properties of Nigerian HIV-1 subtype G and CRF02_AG.
Not available
S-EPMC11218331 | biostudies-literature
UnknownUniversal DNA methylation age across mammalian tissues.
Not available
S-EPMC10501909 | biostudies-literature
UnknownDNA methylation networks underlying mammalian traits.
Not available
S-EPMC11180965 | biostudies-literature
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