Rodriguez G G - OmicsDI

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Unknown (9752)
Transcriptomics (200)
Proteomics (188)
Models (100)
Genomics (39)
Metabolomics (18)
Other (2)

Organisms

Homo sapiens (255)
Mus musculus (74)
Arabidopsis thaliana (16)
Saccharomyces cerevisiae (15)
Apis mellifera (11)
Mammalia (10)
Rattus norvegicus (10)
Bos taurus (9)
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cellular organisms (5)
Eukaryota (5)
Caenorhabditis elegans (4)
Oryctolagus cuniculus (3)
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Mycobacterium tuberculosis (3)
Arabidopsis (2)
Nicotiana tabacum (2)
Pseudomonas putida (2)
Sus scrofa (2)
Acyrthosiphon pisum (1)
Cavia porcellus (1)
Escherichia coli K-12 (1)
Human immunodeficiency virus 1 (1)
Oryctolagus (1)
Ostreococcus tauri (1)
Plasmodium falciparum (1)
Viruses (1)
Xenopus laevis (1)
Sinorhizobium fredii NGR234 (1)

Organisms

Homo sapiens (4)
Gottfriedia luciferensis (1)
Pimephales promelas (1)
gut metagenome (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (208)
pride (163)
BioModels (99)
EGA (21)
MetaboLights (17)
MassIVE (16)
ENA (9)
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GPMDB (2)
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geo (1)
GNPS (1)
iProX (1)

Tissue

Cell culture (22)
Epithelial cell (10)
Kidney (10)
Blood (6)
Brain (6)
Plant cell (6)
Blood plasma (5)
Liver (5)
Lung (5)
Blood cell (4)
Early embryonic cell (4)
Epithelial cell of prostate (4)
Fibroblast (4)
Permanent cell line cell (4)
Root (4)
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Bone marrow (3)
Cell line cell (3)
Colon (3)
Heart (3)
Leaf (3)
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Prostate adenocarcinoma cell line (3)
T cell (3)
UWB1.289 cell (3)
Hepatocyte (2)
Neutrophil (2)
Ovary (2)
Female Reproductive System (1)
Ovary (1)

Disease

Breast cancer (5)
Colon cancer (4)
Prostate carcinoma (4)
Acute leukemia (3)
Alzheimer's disease (3)
COVID-19 (3)
Not Available (2)
Disease free (2)
Malignant neoplasm of ovary (2)
Melanoma (2)
Parkinson's disease (2)
Type 1 diabetes mellitus (2)
Type 2 diabetes mellitus (2)
Diabetes mellitus (1)
Heart disease (1)
Unspecified peripheral T-cell lymphoma (1)
Bladder tumour (1)
Normal (1)
High Grade Ovarian Serous Adenocarcinoma (1)
Acute myeloid leukemia (1)
Arthritis (1)
Bacterial sepsis (1)
Cardiovascular system disease (1)
Cervix carcinoma (1)
Chronic lymphocytic leukemia (1)
Crimean-Congo hemorrhagic fever (1)
Down syndrome (1)
Glaucoma (1)
Hepatocellular carcinoma (1)
Human immunodeficiency virus infectious disease (1)

Technology Type

Mass Spectrometry (163)
Shotgun proteomics (87)
Bottom-up proteomics (36)
Data-dependent acquisition (21)
Affinity purification coupled with mass spectrometry proteomics (17)
Mass spectrometry (10)
Gel-based experiment (10)
SWATH MS (9)
Data-independent acquisition (8)
Top-down proteomics (6)
NMR spectroscopy (5)
Mass spectrometry assay (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
AB 5500xl Genetic Analyzer (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Affinity proteomics (1)
All-ion fragmentation (1)
DiaPASEF (1)
SRM/MRM (1)

Instrument Platform

Axon GenePix 4000B scanning hardware (9)
Illumina HiSeq 2000 (9)
Illumina NovaSeq 6000 (8)
Orbitrap Fusion Lumos (5)
Illumina NovaSeq X (4)
Q Exactive (4)
LTQ Orbitrap Velos (4)
454 GS FLX+ (2)
Illumina Genome Analyzer IIx (2)
Illumina HiSeq 2500 (2)
Instrument (2)
LTQ Orbitrap Elite (2)
LTQ Orbitrap XL (2)
Nanodrop (1)
Ilumina HiScan H166 (1)
BD FACS JAZZ (1)
Illumina iScan (1)
Promega MaxwellÂ® 16 AS2000 (1)
ScanArray 4000 [PerkinElmer] (1)
GenePix Personal 4100A [Axon Instruments] (1)
G2565BA DNA microarray scanner [Agilent] (1)
HiSeq X Ten (1)
NextSeq 550 (1)
Illumina HiSeq 3000 (1)
Illumina HiSeq 4000 (1)
Orbitrap Astral (1)
7000A Triple Quadrupole GC/MS (1)
LTQ Velos (1)
LTQ XL (1)
Orbitrap Exploris 480 (1)

Publication Date

2005 (66)
2024 (59)
2012 (40)
2025 (30)
2026 (29)
2013 (29)
2021 (26)
2015 (24)
2014 (24)
2010 (24)
2023 (21)
2020 (20)
2019 (20)
2011 (20)
2022 (19)
2007 (12)
2018 (11)
2009 (10)
2016 (9)
2017 (8)
2008 (5)
2006 (1)

UNIPROT ID/AC

O14727 (2)
O94916 (2)
P06400 (2)
P06842 (2)
P24864 (2)
P27600 (2)
P42574 (2)
P49677 (2)
P55211 (2)
P98170 (2)
Q94JM3 (2)
Q96247 (2)
Q9NR28 (2)
A5YWB0 (1)
O13525 (1)
O14763 (1)
O15519 (1)
O35599 (1)
O43526 (1)
O54828 (1)
O75293 (1)
O88944 (1)
O95257 (1)
P00044 (1)
P00045 (1)
P00127 (1)
P00128 (1)
P00163 (1)
P00175 (1)
P00330 (1)

ENSEMBL ID

ENSG00000147251 (2)
ENSG00000204131 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000170477 (1)

CHEBI ID

CHEBI:15996 (9)
CHEBI:17552 (9)
CHEBI:29108 (7)
CHEBI:15422 (6)
CHEBI:15428 (6)
CHEBI:18367 (5)
CHEBI:16761 (4)
CHEBI:33699 (4)
CHEBI:16108 (3)
CHEBI:16474 (3)
CHEBI:16526 (3)
CHEBI:17489 (3)
CHEBI:15343 (2)
CHEBI:15361 (2)
CHEBI:15414 (2)
CHEBI:15633 (2)
CHEBI:15635 (2)
CHEBI:15637 (2)
CHEBI:15638 (2)
CHEBI:15641 (2)
CHEBI:15699 (2)
CHEBI:15721 (2)
CHEBI:15846 (2)
CHEBI:15946 (2)
CHEBI:15961 (2)
CHEBI:16001 (2)
CHEBI:16027 (2)
CHEBI:16236 (2)
CHEBI:16332 (2)
CHEBI:16356 (2)

Metabolite Name

L-leucine (3)
Alanine (2)
Aspartic acid (2)
Citric acid (2)
Creatine (2)
Creatinine (2)
Glucose (2)
Glutathione (2)
Glycerol (2)
Glycine (2)
Isoleucine (2)
L-alanine (2)
L-glutamic acid (2)
L-isoleucine (2)
L-threonine (2)
L-valine (2)
Lactate (2)
Myo-inositol (2)
Succinic acid (2)
Valine (2)
(Nω-L-arginino)succinic acid (1)
(R)-pantothenate (1)
(S)-lactate (1)
1-Oleoyl-PE (1)
1-[(5-Amino-5-carboxypentyl)amino]-1-deoxyfructose (1)
1-monolinolein (1)
11-trans-octadecenoic acid (1)
2,5-dihydroxypyrazine (1)
2-Amino-4-hydroxypteridine (1)
2-Hydroxybutyrate (1)

First Public Date

2019 (4)
2025 (2)
2014 (2)
2016 (1)

Modelling Approach

Ordinary differential equation model (89)

Lab affiliation

University Hospital Cologne (6)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (5)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (3)
Cellzome (3)
Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA (2)
Department of Genome Sciences, University of Washington, Seattle, WA, USA (2)
Div. Clinical Protein Science & Imaging, Dept. of Clinical Sciences (Lund) and Dept. of Biomedical Engineering, Lund University, Lund, Sweden (2)
Head of the Curie Institute Mass Spectrometry Platform (2)
Pacific Northwest National Laboratory (2)
Roswell Park Cancer Center Buffalo, NY, USA (2)
University of Southern Denmark, Department of Biochemistryand Molecular Biology, Protein Research Group (lab head) (2)
Universität Hohenheim (260b) Systembiologie der Pflanze Garbenstraße 30, Bio1 U2 70599 Stuttgart (2)
1) CNRS - ITAV USR3505, 31106 Toulouse, France 2) Nova Medical School, CEDOC- Chronic Diseases, 1150-082, Lisboa, Portugal (1)
1Institute of Lung Health and Immunity, Comprehensive Pneumology Center Munich with the CPC-M bioArchive, Helmholtz Center Munich, Research Center for Environmental Health, Member of the German Center of Lung Research (DZL), Germany (1)
8Clinical Protein Science & Imaging, Biomedical Centre, Department of Biomedical Engineering, Lund University, Lund, Sweden (1)
Adicet Bio Inc, Menlo Park, California, United States (1)
Analytical Biochemistry and Proteomics Unit, Institut Pasteur de Montevideo & Instituto de Investigaciones Biológicas Clemente Estable. (1)
Associate Professor of Neuroscience and BIO5 Institute University of Arizona (1)
BGI-Shenzhen, Shenzhen, 518083,China (1)
Berlin Institute for Medical System Biology @ Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association Robert-Rössle-Straße 10, 13125 Berlin, Germany (1)
Bruker Mexicana (1)
CECAD Forschungszentrum, Joseph-Stelzmann-Str. 26, 50931 Köln (1)
CRUK Beatson Institute (1)
Cedars-Sinai, Neurosurgery - Pavilion, 127 S San Vicente Blvd #A6600, Los Angeles, CA, 90048 (1)
Cell Signalling (1)
Center for Infectious Diseases / Parasitology Medical Fakulty Heidelberg University (1)
Centre for Blood Research, Department of Oral Biological and Medical Sciences, University of British Columbia, Vancouver, BC, Canada (1)
Centre for Oncology, Radiopharmaceuticals and Research, Biologic and Radiopharmaceutical Drugs Directorate, Health Products and Food Branch, Health Canada, Ottawa, ON, K1A 0K9, Canada (1)
Centre for Tumour Biology, Barts Cancer Institute, Queen Mary University of London, London, UK (1)
Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC) (1)

IsPrivate

False (99)

Model Flag

Non Kinetic (12)

Modification

-17.026549 (1)
15.994915 (1)
27.994915 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
57.021464 (1)
79.966331 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (132)
RNA-seq of coding RNA (26)
ChIP-seq (7)
Comparative genomic hybridization by array (6)
RNA-seq of coding RNA from single cells (6)
Methylation profiling by array (4)
ChIP-chip by array (3)
Other (3)
RNA-seq of non coding RNA (3)
Transcription profiling by SAGE (2)
Unknown experiment type (2)
ChIP-chip by tiling array (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of total RNA (2)
RIP-chip by array (1)
Human - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
Genotyping by high throughput sequencing (1)

Release Date

2022 (1270)
2023 (1174)
2021 (1159)
2025 (1129)
2024 (1027)
2020 (768)
2019 (576)
2018 (458)
2017 (417)
2016 (315)
2015 (312)
2014 (255)
2012 (203)
2026 (188)
2013 (183)
2011 (160)
2010 (147)
2009 (76)
2008 (38)
2007 (34)
2006 (20)
2005 (14)
2004 (9)
2003 (9)
2001 (7)
2002 (5)
1999 (3)
2000 (2)
1998 (2)

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Yi2003_GproteinCycle

The paper describes both wild-type and mutant cells of G protein cycle by using different values of G protein deactivation. We chosed the wild-type, k=0.11 s-1. The unit of the concentration for the proteins are numbers of molecules per cell. Figure5(A) was reproduced with CO...

2024-09-02 | BIOMD0000000072 | BioModels

Association of TAP1 1177A>G and 2090A>G gene polymorphisms with latent tuberculosis infections in sheltered populations, in the metropolitan area of Guadalajara, Mexico: a pilot study.

Not available

S-EPMC8266304 | biostudies-literature

Soluble HLA-G (sHLA-G) measurement might be useful as an early diagnostic biomarker and screening test for gastric cancer.

Not available

S-EPMC10423220 | biostudies-literature

Targeting DNA G-quadruplexes with helical small molecules.

Not available

S-EPMC4284101 | biostudies-literature

Specific inhibition of GPCR-independent G protein signaling by a rationally engineered protein.

Not available

S-EPMC5715746 | biostudies-literature

Chitosan-G-Glycidyl Methacrylate/Au Nanocomposites Promote Accelerated Skin Wound Healing.

Not available

S-EPMC9505090 | biostudies-literature

Lemon2003_Ca2Dynamics

This a model from the article: Metabotropic receptor activation, desensitization and sequestration-I: modelling calcium and inositol 1,4,5-trisphosphate dynamics following receptor activation. Lemon G, Gibson WG, Bennett MR. J Theor Biol 2003 Jul 7;223...

2005-01-01 | MODEL1006230039 | BioModels

A Non-G-Quadruplex Hemin Aptamer Forms a Better Peroxidase Mimicking DNAzyme.

Not available

S-EPMC12666243 | biostudies-literature

Role of IdeR in Iron-Dependent Gene Expression, Iron Metabolism, and Oxidative Stress Response

The mycobacterial IdeR protein is a metal-dependent regulator of the DtxR (diphtheria toxin repressor) family. In the presence of iron, it binds to a specific DNA sequence in the promoter regions of the genes that it regulates, thus controlling their transcription. In this study, we provide evidence...

ORGANISM(S): Mycobacterium tuberculosis

2007-08-08 | E-GEOD-8732 | biostudies-arrayexpress

A Three-Monoclonal Antibody Combination Potently Neutralizes BoNT/G Toxin in Mice.

Not available

S-EPMC10222606 | biostudies-literature

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10299 Results

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