Rods - OmicsDI

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CHEBI ID

CHEBI:37998 (2)
CHEBI:36259 (2)
CHEBI:180956 (2)
CHEBI:16325 (2)
CHEBI:16755 (2)
CHEBI:9907 (2)
CHEBI:16525 (2)
CHEBI:28834 (2)
CHEBI:16359 (2)
CHEBI:80774 (2)
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CHEBI:16148 (1)
CHEBI:26938 (1)
CHEBI:15384 (1)
CHEBI:17818 (1)
CHEBI:49168 (1)

Metabolite Name

GLCA (2)
TLCA (2)
GDCA (2)
GCDCA (2)
TDCA (2)
TCDCA (2)
TUDCA (2)
GCA (2)
TCA (2)
LCA (2)
DCA (2)
CDCA (2)
UDCA (2)
CA (2)
N-cis-feruloyltyramine (1)
4-methylheptadecane (1)
N-heptadecane (1)
Alpha hydroxylauric acid (1)
2-methoxy-3-(1-methylpropyl) pyrazine (1)
P-aminobenzaldehyde (1)
Dinorcapsaicin (1)
Tetrose (1)
Nonadecane (1)
Homodihydrocapsaicin (1)
Homocapsaicin (1)
DTDP (1)
Limonene (1)
P-coumaric acid (1)
Norcapsaicin (1)
Capsiamide (1)

First Public Date

2013 (44)
2024 (29)
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2026 (20)
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Modelling Approach

Ordinary differential equation model (1)

Study status

Recruiting (1)

Lab affiliation

University of Pennsylvania, Department of Biology (2)
Department of Biochemistry, The University of Western Ontario, London, Ontario, Canada. 2 Bioinformatic Solutions Inc., Waterloo, Ontario, Canada. Department of Chemistry, The University of Western Ontario, London, Ontario, Canada. (1)
Department of Chemistry Washington University in St. Louis (1)
ETH Zürich D-HEST Institut für Neurowissenschaften Molecular and Behavioral Neuroscience (1)
Head / Immunopeptidomics unit Department of Oncology,CHUV Ludwig Cancer Research Center (1)
Lab for Retinal Cell Biology Dept. Ophthalmology USZ / UZH University of Zurich (1)
Laboratory of Molecular and Behavioral Neuroscience, Institute for Neuroscience, Department of Health Sciences and Technology, ETH Zurich, Switzerland (1)
Medical College of Wisconsin (1)
Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, NH, USA (1)
OncoProteomics Laboratory, Dept of Medical Oncology, Amsterdam University Medical Centers, Amsterdam, The Netherlands (1)
Stem Cells and Metabolism Research Program, Faculty of Medicine, University of Helsinki; Helsinki, Finland. (1)
Universuty of Gdansk, Intercollegiate Faculty of Biotechnology, Laboratory of Mass Spectrometry (1)
Winogradsky Institute of Microbiology, Research Center of Biotechnology, RAS. (1)

Keyword

Perla Occipital System (1)

IsPrivate

False (1)

Classification

bacteria (19)
viruses (2)

Study type

Transcription profiling by array (33)
RNA-seq of coding RNA (6)
ChIP-seq (2)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
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Observational (1)

Release Date

2022 (189)
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2005 (15)
2003 (13)
2004 (12)
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2001 (6)
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2000 (4)
1992 (1)

Location

Germany (1)
Austria (1)
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miRNA expression data from CD73-positive Rods, MÃ¼ler glia and E 17.5 Retinal Progenitors

During retinal development, progenitor cells give rise to six different types of neurons, and one glial cell. This process requires the expression of genes that confer specific functions and identity to each cell. Previous works have reported the miRNAs expression profile in retina, but is still nec...

ORGANISM(S): Mus musculus

2016-02-09 | E-GEOD-62109 | biostudies-arrayexpress

Epigenomic Landscapes of Retinal Rods and Cones

Both rod and cone photoreceptors are critical for mammalian vision yet they have important functional differences. In this study, we investigate patterns of DNA methylation and chromatin accessibility in mouse rods and cones. Unexpectedly, we find that a substantial fraction of hypo-methylated regio...

ORGANISM(S): Mus musculus

2016-03-07 | GSE72550 | GEO

ATAC-seq and RNA-seq of adult mouse rods and cones

Rod photoreceptors are specialized neurons that mediate vision in dim light and are the predominant photoreceptor type in nocturnal mammals. The rods of nocturnal mammals are unique among vertebrate cell types in having an 'inverted' nuclear architecture, with a single dense mass of heterochromatin ...

ORGANISM(S): Mus musculus

2017-02-09 | GSE83312 | GEO

Tikidji-Hamburyan2018 - Rod phototransduction under strong illumination

Tikidji-Hamburyan2018 - Rod phototransduction under strong illumination This model is described in the article: Rods progressively escape saturation to drive visual responses in daylight conditions. Tikidji-Hamburyan A, Reinhard K, Storchi R, Dietter J, Seitter H, Davis KE, ...

MODEL1710030000 | BioModels

Articulated rods - a novel class of molecular rods based on oligospiroketals (OSK).

Not available

S-EPMC4311589 | biostudies-literature

Bacteria

MD_net Carbapenem resistant gram negative rods

PRJDB37866 | ENA

Does number of rods matter? 4-, 5-, and 6-rods across a lumbar pedicle subtraction osteotomy: a finite element analysis.

Not available

S-EPMC10147790 | biostudies-literature

Mapping cofilin-actin rods in stressed hippocampal slices and the role of cdc42 in amyloid-beta-induced rods.

Not available