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Unknown (2444)
Transcriptomics (95)
Proteomics (41)
Metabolomics (17)
Genomics (11)
Models (5)
Other (3)
Multiomics (2)

Organisms

Homo sapiens (54)
Mus musculus (22)
Candida albicans (10)
Caenorhabditis elegans (5)
Saccharomyces cerevisiae (4)
Schizosaccharomyces pombe (3)
Escherichia coli (3)
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Daphnia magna (2)
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Rattus norvegicus (2)
Drosophila melanogaster (2)
Arabidopsis thaliana (2)
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 (2)
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Dictyostelium discoideum (1)
unidentified (1)
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Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
Hordeum vulgare (1)
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Escherichia coli K-12 (1)

Organisms

Acetivibrio thermocellus (1)

Repository

biostudies-arrayexpress (98)
pride (29)
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EGA (9)
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Tissue

Cell culture (12)
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Smooth muscle cell of the coronary artery (1)
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Disease

Papillary renal cell carcinoma (1)
Not Available (1)
Acute leukemia (1)
Cervix carcinoma (1)
Chronic myeloid leukemia (1)
Disease free (1)
Leptospirosis (1)
Plasmodium falciparum malaria (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (29)
Mass spectrometry (15)
Shotgun proteomics (15)
Bottom-up proteomics (5)
Gel-based experiment (5)
Top-down proteomics (4)
Affinity purification coupled with mass spectrometry proteomics (2)
Illumina OmniQuad 2.5 - CNVpartition (1)
Mass spectrometry assay (1)
NMR spectroscopy (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (5)
Orbitrap Fusion Lumos (3)
Q Exactive (3)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (3)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - positive - hilic (3)
LTQ Orbitrap Velos (3)
Illumina NovaSeq 6000 (2)
NextSeq 500 (2)
Liquid Chromatography MS - alternating - hilic (2)
MA900, Sony (1)
10x Chromium Controller (1)
Illumina Genome Analyzer (1)
GenePix Professional 4200A [Axon Instruments] (1)
GenePix 4000A [Axon Instruments] (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
Instrument (1)
Impact II (1)
MaXis (1)
NanoACQUITY UPLC (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Q Exactive Plus (1)
QExactive HFX (1)
SolariX (1)
Bruker (1)
Liquid Chromatography MS - positive (1)
Orbitrap Fusion (Thermo Fisher Scientific) (1)
Orbitrap Fusion (Thermo Fisher Scientific)_negative (1)

Publication Date

2014 (21)
2023 (14)
2022 (12)
2011 (12)
2010 (12)
2013 (11)
2008 (11)
2012 (7)
2021 (7)
2015 (6)
2025 (6)
2026 (5)
2019 (5)
2009 (5)
2020 (5)
2024 (4)
2018 (4)
2017 (3)
2016 (2)
2007 (2)
2006 (2)
2005 (2)

UNIPROT ID/AC

A0A024R563 (2)
A0A024RAN2 (2)
A0A024RC46 (2)
A0A0A0MR66 (2)
A0A0A0MSA7 (2)
A0A0C4DG89 (2)
A0FGR8 (2)
A0FGR8-2 (2)
A0FGR8-6 (2)
A0MZ66 (2)
A1L170 (2)
A1X283 (2)
A3KN83 (2)
A5A3E0 (2)
A5YM69 (2)
A6NFI3 (2)
A6NMQ1 (2)
A7E2V4 (2)
A8CG34 (2)
A8MQ03 (2)
A9IYQ1 (2)
B3KML9 (2)
B4DKM5 (2)
B4DPR2 (2)
B4DRV9 (2)
B4DY08 (2)
B4E3A4 (2)
B4E3H1 (2)
B5MBZ0 (2)
B5MCI0 (2)

ENSEMBL ID

ENSMUSG00000021039 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000098557 (1)
ENSMUSP00000069525 (1)
ENSMUSP00000140201 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:15741 (6)
CHEBI:16708 (6)
CHEBI:15354 (5)
CHEBI:16027 (5)
CHEBI:16870 (5)
CHEBI:30769 (5)
CHEBI:32816 (5)
CHEBI:15422 (4)
CHEBI:16235 (4)
CHEBI:16761 (4)
CHEBI:17368 (4)
CHEBI:18050 (4)
CHEBI:30797 (4)
CHEBI:30915 (4)
CHEBI:15699 (3)
CHEBI:15824 (3)
CHEBI:15940 (3)
CHEBI:15971 (3)
CHEBI:16010 (3)
CHEBI:16040 (3)
CHEBI:16359 (3)
CHEBI:16610 (3)
CHEBI:16643 (3)
CHEBI:16704 (3)
CHEBI:16742 (3)
CHEBI:16811 (3)
CHEBI:16828 (3)
CHEBI:16856 (3)
CHEBI:16857 (3)
CHEBI:17015 (3)

Metabolite Name

2,6-Di-tert-butyl-4-hydroxymethylphenol (3)
AMP (3)
Adenine (3)
Cholic acid (3)
Elaidic acid (3)
Glucose 6-phosphate (3)
Guanine (3)
L-Glutamine (3)
Sn-glycero-3-Phosphocholine (3)
Spermidine (3)
Succinate (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2-Deoxy-D-glucose (2)
2-Keto-D-gluconic acid (2)
9(10)-EpOME (2)
ADP (2)
Adenosine (2)
Aspartyl-L-proline (2)
Betaine (2)
Caffeine (2)
Choline (2)
Citrate (2)
Cyclic AMP (2)
D-Fructose (2)
D-Fructose 6-phosphate (2)
D-Galacturonate (2)
D-Glucose (2)

First Public Date

2016 (1)

Study type

Transcription profiling by array (73)
RNA-seq of coding RNA (7)
RNA-seq of coding RNA from single cells (3)
Unknown experiment type (2)
Comparative genomic hybridization by array (2)
ChIP-chip by tiling array (1)
Human - One-color microarray (1)
ChIP-chip by array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Spatial transcriptomics by high-throughput sequencing (1)
ChIP-seq (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (279)
2021 (272)
2025 (242)
2024 (219)
2023 (218)
2020 (191)
2019 (148)
2018 (126)
2015 (111)
2017 (107)
2016 (101)
2014 (97)
2012 (83)
2013 (76)
2011 (70)
2010 (41)
2009 (40)
2026 (39)
2008 (35)
2007 (14)
2006 (10)
2005 (7)
2004 (6)
2003 (4)
2000 (3)
2001 (2)
2002 (1)

Lab affiliation

Department of Cell Biology, Harvard Medical School, Boston, MA, USA (3)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK (3)
Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore (2)
-The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, Victoria 3052, Australia. -Department of Medical Biology, University of Melbourne, Parkville, Victoria 3010, Australia. (1)
ANZAC Research Institute, The University of Sydney (1)
Centre for Medicines Discovery & Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Oxford, UK (1)
Chief Scientific Officer, Pelago Bioscience AB (1)
Chief Scientific Offiser, Pelago Bioscience AB (1)
Department of Biochemistry and Molecular Biology Oklahoma State University Stillwater, OK 74078 USA (1)
Department of Genome Sciences, University of Washington, USA (1)
Department of Translational Hematology and Oncology Research, Taussig Cancer Institute, Cleveland Clinic, Cleveland, OH, USA (1)
Deputy Director – Science Strategy The Walter and Eliza Hall institute of Medical Research Professor, Department of Medical Biology Faculty of Medicine, Dentistry and Health The University of Melbourne Australia (1)
Emmy-Noether Research Group Cellular Proteomics and Metabolic Signaling Institute for Diabetes and Obesity Helmholtz Diabetes Center Germany (1)
Genome Integrity Unit, Children's Medical Research Institute, Westmead, Australia, 2145 (1)
Harvard Medical School/Brigham and Women's Hospital (1)
Luxembourg institute of Science and Technology Environmental research and Technology Environmental Resarch and Technolgy Platform (1)
NIH NCATS (1)
School of Biosciences University of Sheffield Western Bank Sheffield S10 2TN United Kingdom (1)
Structural Genomics Consortium, Nuffield Department of Clinical Medicine, University of Oxford, UK Target Discovery Institute, Nuffield Department of Clinical Medicine, University of Oxford, UK (1)
The Institute of Cancer Research, London (1)
The Kinghorn Cancer Center, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia. St. Vincent's Clinical School, Faculty of Medicine, UNSW, Darlinghurst, NSW, Australia (1)
Translational Biology and Engineering Program, Ted Rogers Centre for Heart Research, Toronto, Ontario M5G 1M1, Canada (1)
USDA- ARS- NAA Foreign Disease Weed Science Research Unit 1301 Ditto Ave. Fort Detrick, MD 21702 (1)
University of Edinburgh (1)

Tags

xref:PubMed:28230109 (1)

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A Model System for Studying the Transcriptomic and Physiological Changes Associated with Mammalian Host-Adaptation by Leptospira interrogans Serovar Copenhageni

Leptospirosis, an emerging zoonotic disease with worldwide distribution, is caused by spirochetes belonging to the genus Leptospira. More than 500,000 cases of severe leptospirosis are reported annually, with .10% of these being fatal. Leptospires can survive for weeks in suitably moist conditions b...

ORGANISM(S): Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

2014-03-20 | E-GEOD-53818 | biostudies-arrayexpress

L-arginine deprivation impairs Leishmania major-specific T-cell responses.

Not available

S-EPMC2948424 | biostudies-literature

Glucose sensing in L cells: a primary cell study.

Not available

S-EPMC2697331 | biostudies-literature

Transcriptome Profiling of Zymomonas mobilis under furfural stress

Investigation of the expression profiling of the ethanologenic Zymomonas mobilis in response to furfural stress. A six chip study using total RNA recovered from three separate wild-type cultures of Zymomonas mobilis ATCC31821 and three separate cultures of a triple treated with 1.0 g/l furfural. Eac...

ORGANISM(S): Zymomonas mobilis subsp. mobilis ZM4

2012-05-08 | E-GEOD-37848 | biostudies-arrayexpress

The glutaminase activity of L-asparaginase is not required for anticancer activity against ASNS-negative cells.

Not available

S-EPMC4047499 | biostudies-literature

Association mapping of stigma and spikelet characteristics in rice (Oryza sativa L.).

Not available

S-EPMC2837221 | biostudies-literature

Structure of the core editing complex (L-complex) involved in uridine insertion/deletion RNA editing in trypanosomatid mitochondria.

Not available

S-EPMC2708173 | biostudies-literature

Proteophosophoglycans regurgitated by Leishmania-infected sand flies target the L-arginine metabolism of host macrophages to promote parasite survival.

Not available

S-EPMC2722086 | biostudies-literature

An anti-PD-1-GITR-L bispecific agonist induces GITR clustering-mediated T cell activation for cancer immunotherapy.

Not available

S-EPMC8960412 | biostudies-literature

Transcriptional pattern of E. coli BW25113 and its ptsA, glpK and dhaKLM isogenic mutants growing on DHA (dihydroxyacetone).

Dihydroxyacetone (DHA) is an attractive molecule produced in a wide range of industries . DHA is found among all the kingdoms as an intermediate of various metabolic pathways and can be used as a carbon source by many organisms. The bacterium Escherichia coli is able to grow on DHA as the sole carbo...

ORGANISM(S): Escherichia coli K-12

2019-06-03 | E-MTAB-7666 | biostudies-arrayexpress

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2618 Results

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