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TranscriptomicsRNAseq of young adult C. elegans animals fed on three different bacterial diets, E. coli OP50, B. subtilis PXN21 and a mixture of both
To uncover the host response pathways that are modified by a B. subtilis diet and that may provide the protective effect against α-synuclein aggregation, we performed comparative global transcriptomics analysis using next generation RNA sequencing (RNA-seq). We compared young adult animals fed on th...
ORGANISM(S): Caenorhabditis elegans 
2020-01-14 | E-MTAB-8164 | biostudies-arrayexpress
TranscriptomicsRNA-seq of atspf30-1 vs Col-0 seedlings grown in LL conditions.
The purpose of this experiment was to compare alternative splicing (AS) differences between a mutant line of SPF30 (atspf30-1) and it wild type genomic background (Col-0)
ORGANISM(S): Arabidopsis thaliana 
2020-04-02 | E-MTAB-8667 | biostudies-arrayexpress
TranscriptomicsRNA-seq of a time series experiment of leaf 3 tissue (primordia / leaf blade) of Arabidopsis plants grown under EoD FR since day 6, since day 18 or under WL conditions.
This RNA-seq was designed to help gain understanding on the genetic program behind phytochrome developmental time dependent control of leaf 3 (L3) cell proliferation and expansion phases, to ultimately regulate organ growth. Briefly, Arabidopsis thaliana Col-0 plants were grown under a light : dark ...
ORGANISM(S): Arabidopsis thaliana 
2021-02-18 | E-MTAB-9445 | biostudies-arrayexpress
TranscriptomicsEffect of shade and nitrogen content on Arabidopsis Col-0 and cytokinin mutants abcg14 and cypDM
This project aimed to understand the interplay between light signalling, transzeatin signalling and nitrogen availability on hypocotyl elongation responses. To do so, mRNAseq on shoots was performed, with the following variables studied in all possible combinations: Genotypes: Wild-Type (Col-0), ...
ORGANISM(S): Arabidopsis thaliana 
2024-09-19 | E-MTAB-13638 | biostudies-arrayexpress
TranscriptomicsRNAseq of 6 day old shoots of 6 rice accessions under WL or WL + supplemental FR (far-red) light
This experiment was designed to uncover the transcriptomic changes that would occur in rice after 24 h of supplemental FR treatment, in an accession dependant manner. To do so, 6 different varieties of rice (IR64, Nipponbare, Luk Takhar, M Blatec, Mudgo, Sabharaj and Zhenshan) were grown in the gree...
ORGANISM(S): Oryza sativa 
2024-04-24 | E-MTAB-13023 | biostudies-arrayexpress
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