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MetabolomicsStress-related mitogen-activated protein kinases stimulate the accumulation of small molecules and proteins in Arabidopsis thaliana root exudates
A delicate balance in cellular signaling is required for plants to distinguish mutualist from parasitic organisms in its environment. Mitogen-activated protein kinase (MAPK) cascades are one of the signaling modules that mediate transduction of extracellular microbial signals into appropriate cellul...
2017-08-25 | MTBLS441 | MetaboLights
MetabolomicsPlant-to-plant variability in root metabolite profiles of 19 Arabidopsis thaliana accessions is substance-class dependent
Natural variation of secondary metabolism between different accessions of Arabidopsis thaliana has been studied extensively. In this study, we extended the natural variation approach by including biological variability and analyzed root metabolic patterns as well as their variability between plants ...
2022-11-18 | MTBLS338 | MetaboLights
MetabolomicsPb Stress and Ectomycorrhizas: Strong Protective Proteomic Responses in Poplar Roots Inoculated with Paxillus involutus Isolate and Characterized by Low Root Colonization Intensity
The commonly observed increased heavy metal tolerance of ectomycorrhized plants is usually linked with the protective role of the fungal hyphae covering colonized plant root tips. However, the molecular tolerance mechanisms in heavy metal stressed low-colonized ectormyocrrhizal plants characterized ...
2022-01-11 | MTBLS1847 | MetaboLights
TranscriptomicsTranscription profiling of Medicago truncatula root meristem cells
The root apical meristems (RAM) is established during embryogenesis and serves as a source of stem cells for plant growth and organogenesis. Young roots have a simple structure and meristeamtic and non-meristematic cells can be differentiated based on their location. We have used the Affymetrix Medi...
ORGANISM(S): Medicago truncatula 
2008-06-16 | E-GEOD-8115 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of rice roots and tips in early development by massive parallel sequencing
Despite the major physiological dissimilarities between roots and their tips, differences in their gene expression profiles remain largely unexplored. In this research, the transcriptome of rice (Oryza sativa L. subsp. Japonica) mature root tissue and root tips was monitored using mRNA-Seq at 2 time...
ORGANISM(S): Oryza sativa Japonica Group 
2012-01-12 | E-GEOD-30367 | biostudies-arrayexpress
TranscriptomicsA timecourse of IAA treatment on the Arabidopsis root tip
A timecourse of IAA treatment on the Arabidopsis root tip
ORGANISM(S): Arabidopsis thaliana 
2013-05-12 | E-MTAB-1354 | biostudies-arrayexpress
TranscriptomicsExpression data from Arabidopsis wild type and ibr1 ibr3 ibr10 triple mutant seedlings root tip segments treated with indole-3-butyric acid (IBA)
The root cap-specific conversion of the auxin precursor indole-3-butyric acid (IBA) into the main auxin indole-3-acetic acid (IAA) generates a local auxin source which subsequently modulates both the periodicity and intensity of auxin response oscillations in the root tip of Arabidopsis, and consequ...
ORGANISM(S): Arabidopsis thaliana 
2015-05-12 | E-GEOD-59426 | biostudies-arrayexpress
OtherPhosphoproteomics Reveals the Effect of Ethylene in Soybean Root under Flooding Stress.
Data from ProteomeXchange, PXD ID: PXD000898. File: 51 0 4.mgf. Published as part of J Proteome Res. 2014 Oct 24 . From the Abstract: {{i}} To explore the flooding-responsive mechanisms in early-stage soybean, a phosphoproteomic approach was used. Two-day-old soybean plants were treated without or ...
ORGANISM(S): Glycine_max 
GPM32310004941 | GPMDB
Resource Reanalysis 
GenomicsTranscriptome gene expression analysis of root tip, leaf tip, shoot tip, root (without root tip) and leaf (without leaf tip) from Ceratopteris richardii sporophytes
Transcriptome gene expression analysis of root tip, leaf tip, shoot tip, root (without root tip) and leaf (without leaf tip) from Ceratopteris richardii sporophytes
PRJNA578676 | ENA
TranscriptomicsTranscriptional reprogramming by root knot and migratory nematode infection in rice
In this study a comparison was made between the local transcriptional changes at two time points upon root knot (Meloidogyne graminicola) and migratory nematode (Hirschmanniella oryzae) infection in rice. Using mRNA-Seq we have characterized specific and general responses of the root challenged with...
ORGANISM(S): Oryza sativa Japonica Group 
2013-01-10 | E-GEOD-35843 | biostudies-arrayexpress
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