Roy F F - OmicsDI

OmicsDI

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Unknown (2155)
Transcriptomics (76)
Proteomics (38)
Genomics (12)
Metabolomics (12)
Models (1)

Organisms

Homo sapiens (53)
Mus musculus (18)
Saccharomyces cerevisiae (6)
Myxococcus xanthus (3)
Schmidtea mediterranea (2)
Rattus norvegicus (2)
Sus scrofa (2)
Drosophila melanogaster (2)
Arabidopsis thaliana (2)
Escherichia coli (2)
Klebsiella pneumoniae (2)
Klebsiella variicola (2)
Staphylococcus aureus (2)
Streptococcus pyogenes (2)
Trypanosoma brucei (1)
Schizosaccharomyces japonicus (1)
Acropora millepora (1)
Leishmania tarentolae (1)
Salmonella enterica (1)
Equus caballus (1)
Apis mellifera (1)
Lotus japonicus (1)
Emiliania huxleyi (1)
Populus tremula x Populus alba (1)
Solanum tuberosum (1)
Oryza sativa Japonica Group (1)
Caenorhabditis elegans (1)
Gallus gallus (1)
Bordetella bronchiseptica (1)
Flavobacterium johnsoniae (1)

Repository

biostudies-arrayexpress (83)
pride (28)
MetaboLights (11)
PAXDB (6)
EGA (4)
MassIVE (3)
BioModels (1)
GNPS (1)
jPOST (1)
ENA (1)

Tissue

Cell culture (10)
Permanent cell line cell (3)
Epithelial cell (2)
Blood serum (1)
Excretion (1)
Feces (1)
Fibroblast (1)
Nerve cord (1)
Peripheral blood mononuclear cell (1)
Primary cell (1)
Secretion (1)
Splenocyte (1)

Disease

Breast cancer (1)
Inflammatory bowel disease (1)

Technology Type

Mass Spectrometry (28)
Mass spectrometry (11)
Shotgun proteomics (10)
Bottom-up proteomics (9)
Data-dependent acquisition (6)
SWATH MS (5)
Gel-based experiment (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Top-down proteomics (1)

Instrument Platform

Q Exactive (2)
Liquid Chromatography MS - positive - reverse phase (2)
Hybridized arrays (1)
Total RNA from honey bee brains (1)
Labeled RNA (1)
Honey bee (Apis mellifera) colony. (1)
Brains of infected and control honey bees (1)
White-eye pupae, purified DWV particles (1)
White eye pupae without manipulation. (1)
418 [Affymetrix] (1)
Illumina HiSeq 3000 (1)
Illumina HiSeq 4000 (1)
Q Exactive Plus (1)
TSQ Quantum Ultra (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS -neg - hilic (1)
Liquid Chromatography MS – pos - hilic (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Xevo QTof MS (Waters) (1)

Publication Date

2014 (16)
2015 (12)
2021 (12)
2013 (11)
2012 (11)
2010 (11)
2016 (9)
2011 (9)
2024 (8)
2022 (8)
2026 (5)
2023 (4)
2008 (4)
2020 (4)
2007 (3)
2019 (2)
2018 (2)
2017 (1)
2009 (1)
2025 (1)

UNIPROT ID/AC

3880.AES58538 (6)
3880.AES58539 (6)
3880.AES58557 (6)
3880.AES58577 (6)
3880.AES58595 (6)
3880.AES58596 (6)
3880.AES58598 (6)
3880.AES58611 (6)
3880.AES58637 (6)
3880.AES58673 (6)
3880.AES58697 (6)
3880.AES58766 (6)
3880.AES58788 (6)
3880.AES58833 (6)
3880.AES58880 (6)
3880.AES58897 (6)
3880.AES58900 (6)
3880.AES58960 (6)
3880.AES58990 (6)
3880.AES59003 (6)
3880.AES59180 (6)
3880.AES59185 (6)
3880.AES59286 (6)
3880.AES59334 (6)
3880.AES59339 (6)
3880.AES59397 (6)
3880.AES59531 (6)
3880.AES59549 (6)
3880.AES59555 (6)
3880.AES59608 (6)

CHEBI ID

CHEBI:27266 (7)
CHEBI:18186 (6)
CHEBI:18211 (6)
CHEBI:18237 (6)
CHEBI:24898 (6)
CHEBI:25017 (6)
CHEBI:25094 (6)
CHEBI:28044 (6)
CHEBI:28300 (6)
CHEBI:29016 (6)
CHEBI:15428 (5)
CHEBI:16449 (5)
CHEBI:15422 (1)
CHEBI:15846 (1)
CHEBI:15978 (1)
CHEBI:16001 (1)
CHEBI:16027 (1)
CHEBI:16084 (1)
CHEBI:16108 (1)
CHEBI:16761 (1)
CHEBI:16908 (1)
CHEBI:17754 (1)
CHEBI:17794 (1)
CHEBI:17835 (1)
CHEBI:18021 (1)
CHEBI:28013 (1)
CHEBI:29052 (1)
CHEBI:32816 (1)
CHEBI:4167 (1)
CHEBI:4170 (1)

Metabolite Name

Valine (4)
AMP (3)
Adenine (3)
Alanine (3)
Allantoin (3)
Arginine (3)
Asparagine (3)
Citrulline (3)
Creatine (3)
Creatinine (3)
Cystathionine (3)
Glutamine (3)
Glycine (3)
Guanine (3)
Histidine (3)
Hypoxanthine (3)
Indolelactate (3)
Isoleucine (3)
Isoleucine (3)
Leucine (3)
Leucine (3)
Lysine (3)
Methionine (3)
Ornithine (3)
Phenylalanine (3)
Proline (3)
Pseudouridine (3)
Putrescine (3)
Serine (3)
Spermidine (3)

IsPrivate

False (1)

First Public Date

2020 (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (55)
ChIP-seq (7)
Unknown experiment type (6)
RNA-seq of coding RNA (6)
Comparative genomic hybridization by array (3)
RNA-seq of non coding RNA (2)
Baseline (1)
ChIP-chip by array (1)
Other (1)
RNA-seq of total RNA (1)

Release Date

2022 (251)
2025 (250)
2024 (234)
2021 (233)
2023 (204)
2020 (156)
2019 (122)
2015 (111)
2018 (108)
2016 (95)
2017 (92)
2014 (85)
2012 (52)
2011 (47)
2013 (45)
2010 (37)
2026 (36)
2009 (22)
2008 (18)
2007 (12)
2006 (5)
2005 (5)
2004 (4)
2000 (3)
2003 (2)
2002 (2)
2001 (2)
1999 (2)
1998 (2)
1997 (1)

Lab affiliation

Bioplatforms Australia (7)
Department of Molecular Biology, College of Agriculture, Life Sciences and Natural Resources, University of Wyoming, United States of America (3)
Assistant Professor of Neurological Sciences Columbia University (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (1)
Bioplatforms Australia (project manager) (1)
Centre for Haemato-oncology, Barts Cancer Institute, Queen Mary University of London, London, EC1M6BQ, UK (1)
Department of Chemistry, Scripps Research, La Jolla, CA 92037, USA (1)
Department of Oncology / University of Oxford (1)
Functional Genomics Laboratory, Translational Health Science and Technology Institute (1)
Lab of Aquaculture & Artemia Reference Center, Department of Animal Sciences and Aquatic Ecology, Faculty of Bioscience Engineering, Ghent University, 9000 Ghent, Belgium (1)
Laboratory of Intestinal Physiopathology, Department of Immunology and Cell Biology, Faculty of Medicine and Health Sciences, Université de Sherbrooke, Sherbrooke, QC, J1H 5N4, Canada (1)
Neil F. Inglis Moredun Proteomics Facility Moredun Research Institute Pentlands Science Park Bush Loan Penicuik Midlothian EH26 0PZ Tel +44 131 445 5111 (1)
Proteins and Metabolites Team, AgResearch, Lincoln, Christchurch, New Zealand. (1)
Roy J. Carver Dept. of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA USA (1)
Scripps Research (1)
Supramolecular and Biomaterials Chemistry, Leiden Intitute of Chemistry, Leiden University, The Netherlands (1)
The Alexander Silberman Institute of Life Science and The Wolfson Centre for Applied Structural Biology, Faculty of Science and Mathematics, The Edmond J. Safra Campus at Givat Ram,TheHebrew University of Jerusalem, Jerusalem, 91904, Israel. (1)
UCSF (1)
Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, US41 – UMS 2014 – PLBS, F-59000 Lille, France (1)
University of Tübingen, Interfaculty Institute of Microbiology and Infection Medicine (IMIT), Section of Cellular and Molecular Microbiology, Elfriede-Aulhorn-Str. 6, 72076 Tübingen, Germany (1)