Rp11 - OmicsDI

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Transcriptomics (1343)
Unknown (474)
Proteomics (208)
Genomics (198)
Metabolomics (12)
Other (8)
Methylation profiling (2)
Multiomics (2)
Models (1)

Organisms

Homo sapiens (558)
Mus musculus (413)
Arabidopsis thaliana (127)
Saccharomyces cerevisiae (94)
Rattus norvegicus (40)
Drosophila melanogaster (32)
Caenorhabditis elegans (32)
Streptomyces venezuelae (26)
Gallus gallus (19)
Escherichia coli (18)
Schizosaccharomyces pombe (15)
Bos taurus (14)
Danio rerio (14)
Sus scrofa (6)
Ctenopharyngodon idella (6)
Macaca fascicularis (5)
Triticum aestivum (5)
Apostichopus japonicus (4)
Cyprinus carpio (4)
Campylobacter jejuni (4)
Listeria monocytogenes (3)
Zea mays (3)
Solanum lycopersicum (3)
Escherichia coli K-12 (3)
Cryptococcus neoformans (3)
Macrobrachium nipponense (2)
Carassius auratus (2)
Macaca mulatta (2)
Papio hamadryas (2)
Plasmodium berghei (2)

Organisms

Homo sapiens (47)
Mus musculus (2)
Paraburkholderia madseniana (1)

Repository

biostudies-arrayexpress (1418)
MassIVE (124)
jPOST (54)
ENA (54)
geo (48)
EGA (28)
MetaboLights (11)
PanoramaPublic (10)
iProX (8)
LINCS (7)
PAXDB (6)
EVA (4)
pride (3)
Cell Collective (1)
GNPS (1)

Tissue

Retina (1)
Epithelial cell (1)
Cell culture (1)

Disease

Normal (8)
Squamous Cell Carcinoma (2)
Reference (2)
Mammary tumor (2)
ER positive breast cancer (1)
Unspecified peripheral T-cell lymphoma (1)
Oropharynx squamous-cell carcinoma in DiseaseLocation oropharynx has DiseaseStaging lymph node negative (N0) (1)
B-cell chronic lymphocytic leukemia (1)
Not applicable (1)
Myeloid neoplasm (1)
Phyllodes tumor (1)
Embryonic lethal at day 8.5 to 9.5 (1)
Sham infected (1)
Immuno-osseus dysplasiaspondyloenchondrodysplasia (SPENCD) (1)
Hodgkin lymphoma, mixed cellularity, stage IV (1)
Infected (1)
Heterodera schachtii nematode infection (1)
MFC II (1)
Mammary adenocarcinoma (pleural effusion) (1)
No local recurrence (1)
Triple negative breast cancer (1)
Chronic granulomatous disease (1)
Mock infected (1)
IRAK-4 Q293X mutation (1)
Infected (1)
Colon carcinoma (1)
Invasive lobular carcinoma (1)
IBDV infected (1)
Hyperglycaemic (1)
Colonic adenocarcinoma (1)

Technology Type

P100 (7)
Mass spectrometry (7)
Mass spectrometry (5)
Mass spectrometry assay (5)
Illumina HiSeq 2000 (3)
Mass Spectrometry (3)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (2)
Data-dependent acquisition (2)
Bottom-up proteomics (2)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 1500 (ILLUMINA) (1)
Illumina HiSeq 2500 (1)
NMR spectroscopy (1)
Shotgun proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (50)
NextSeq 500 (34)
Illumina HiSeq 2000 (32)
Illumina HiSeq 2500 (26)
Illumina HiSeq 4000 (25)
NextSeq 550 (14)
NextSeq 2000 (8)
Illumina MiSeq (5)
Illumina HiSeq 1500 (5)
ScanArray 5000 [PerkinElmer] (4)
G2565AA DNA microarray scanner [Agilent] (4)
G2565BA DNA microarray scanner [Agilent] (4)
Illumina NovaSeq X (4)
HiSeq X Ten (4)
Illumina HiSeq 3000 (4)
Scanning hardware (3)
Desktop (2)
Sony SH800 (2)
GenePix 4000B [Axon Instruments] (2)
Illumina Genome Analyzer II (2)
BGISEQ-500 (2)
TruSeq stranded Total RNA kit (1)
Affymetrix GCS 3000 (1)
GeneChip® Pico Kit (Affymetrix) (1)
Affymetrix Clariom™ S (400 Format) (1)
KAPA RNA HyperPrep Kit (1)
BD FACS Aria II (1)
Eppendorf EpMotion 5073m pipetting robot (1)
RNA Qubit (Invitrogen Q32852) (1)
Zymo Quick-RNA Microprep Kit (Zymo Research R1051) (1)

Publication Date

2010 (155)
2014 (149)
2015 (148)
2013 (132)
2012 (118)
2011 (107)
2008 (105)
2022 (96)
2016 (92)
2009 (65)
2023 (61)
2024 (56)
2021 (45)
2025 (41)
2020 (40)
2019 (40)
2018 (40)
2026 (39)
2007 (38)
2006 (29)
2017 (27)
2005 (20)
2004 (10)
2003 (6)

UNIPROT ID/AC

DYN1_RAT (2)
D3ZCV6_RAT (2)
D3ZMS3_RAT (2)
10116.ENSRNOP00000059382 (2)
F1LRC6_RAT (2)
D3ZM20_RAT (2)
NRDC_RAT (2)
CO2A1_RAT (2)
H2AJ_RAT (2)
HS71A_RAT (2)
10116.ENSRNOP00000038745 (2)
CXB2_RAT (2)
KCC2A_RAT (2)
M0R8B6_RAT (2)
PLOD2_RAT (2)
GNAQ_RAT (2)
CHKA_RAT (2)
AL1A2_RAT (2)
RNAS4_RAT (2)
10116.ENSRNOP00000046711 (2)
10116.ENSRNOP00000008094 (2)
HNRPM_RAT (2)
10116.ENSRNOP00000066778 (2)
KPYR_RAT (2)
HS90A_RAT (2)
DNM1L_RAT (2)
ACTS_RAT (2)
CLIC5_RAT (2)
10116.ENSRNOP00000060273 (2)
D3ZX02_RAT (2)

CHEBI ID

CHEBI:17053 (3)
CHEBI:16856 (3)
CHEBI:17202 (3)
CHEBI:18050 (3)
CHEBI:17295 (3)
CHEBI:15891 (3)
CHEBI:15996 (2)
CHEBI:17489 (2)
CHEBI:16908 (2)
CHEBI:18307 (2)
CHEBI:15422 (2)
CHEBI:16264 (2)
CHEBI:16108 (2)
CHEBI:17268 (2)
CHEBI:18183 (2)
CHEBI:17115 (2)
CHEBI:16761 (2)
CHEBI:16857 (2)
CHEBI:17196 (2)
CHEBI:15611 (2)
CHEBI:18132 (2)
CHEBI:16927 (2)
CHEBI:18287 (2)
CHEBI:30746 (2)
CHEBI:18019 (2)
CHEBI:17895 (2)
CHEBI:17203 (2)
CHEBI:17191 (2)
CHEBI:16977 (2)
CHEBI:16643 (2)

Metabolite Name

Glutathione (3)
L-Threonine (3)
Phosphorylcholine (3)
L-Glutamine (3)
L-Arginine (3)
Taurine (3)
Choline (3)
L-Aspartic acid (3)
L-Phenylalanine (3)
N6,N6,N6-Trimethyl-L-lysine (2)
L-Pipecolic acid (2)
Diethanolamine (2)
Cyclic AMP (2)
N1-Acetylspermidine (2)
Acetaminophen (2)
Propionic acid (2)
Triethanolamine (2)
N-Acetylputrescine (2)
Dopamine (2)
Arecoline (2)
Betaine (2)
L-Asparagine (2)
Myo-Inositol (2)
Pyrrolidine (2)
Inosinic acid (2)
ADP (2)
Glycerophosphocholine (2)
L-Carnitine (2)
Sarcosine (2)
Maltotriose (2)

First Public Date

2022 (11)
2019 (9)
2025 (6)
2024 (6)
2020 (4)
2018 (4)
2026 (3)
2023 (3)
2014 (3)
2021 (2)
2017 (2)
2015 (1)

Study type

Transcription profiling by array (821)
RNA-seq of coding RNA (185)
ChIP-seq (86)
Other (52)
RNA-seq of non coding RNA (37)
Methylation profiling by array (30)
ChIP-chip by tiling array (24)
Comparative genomic hybridization by array (24)
RNA-seq of coding RNA from single cells (17)
Unknown experiment type (15)
DNA-seq (13)
ChIP-chip by array (12)
Cell line - High-throughput sequencing (10)
RNA-seq of total RNA (8)
High-throughput sequencing (7)
Animal - High-throughput sequencing (7)
Transcription profiling by tiling array (6)
GRO-seq (5)
RIP-seq (5)
CLIP-seq (4)
MicroRNA profiling by array (4)
RNAi profiling by array (3)
Transcription profiling by RT-PCR (3)
ATAC-seq (3)
Single nucleus RNA sequencing (3)
Methylation profiling by high throughput sequencing (3)
MicroRNA profiling by high throughput sequencing (2)
Exome sequencing (2)
Genotyping by high throughput sequencing (2)
PRO-seq (1)

Release Date

2014 (158)
2010 (155)
2015 (149)
2013 (136)
2012 (119)
2022 (118)
2021 (107)
2011 (107)
2008 (106)
2016 (104)
2020 (83)
2019 (71)
2009 (66)
2023 (63)
2025 (55)
2024 (55)
2018 (55)
2007 (43)
2017 (41)
2006 (32)
2026 (31)
2005 (21)
2004 (10)
2003 (6)
2002 (1)

Lab affiliation

Institute of Translational Medicine and New Drug Development, Research Center for Cancer Biology, China Medical University (1)
Bioanalytical Mass Spectrometry Group, Max-Planck-Institute for Biophysical Chemistry Department of Clinical Chemistry, University Medical Center Goettingen (1)
Max Planck Institute for Multidisciplinary Sciences, Bioanalytical Mass Spectrometry Group, Göttingen, Germany University Medical Center Göttingen, Department of Clinical Chemistry, Bioanalytics Group, Göttingen, Germany (1)

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Gene expression microarray analysis of lncRNA TCAM1P-004-knockdown or RP11-598D14.1-knockdown in MIHA cells

Downregulations of TCAM1P-004 and RP11-598D14.1 were frequently observed in HCC tumors as compared to adjacent non-tumor tissues. To further study the molecular functions of TCAM1P-004 and RP11-598D14.1, we attempted to identify the gene targets regulated by either lncRNAs. Knockdown of TCAM1P-004 o...

ORGANISM(S): Homo sapiens

2018-10-24 | E-MTAB-7280 | biostudies-arrayexpress

Paraburkholderia madseniana strain:RP11

Paraburkholderia madseniana strain:RP11 Genome sequencing and assembly

PRJNA558488 | ENA

dCas9 activation of RP11-326A19.4

PRJNA548121 | ENA

dCas9 activation of RP11-326A19.4 phase 2

PRJNA595901 | ENA

CRISPR mediated deletion of RP11-326A19.4/CARMAL

PRJNA595900 | ENA

lncSLCC1(RP11-400N13.2)-regulated genes in Colorectal Cancer

PRJNA630154 | ENA

The Role of Non-Conserved Long Noncoding RNA, RP11-184M15.1, in Human Macrophage Function

PRJNA903136 | ENA

dCas9 activation of RP11-326A19.4

Transfection experiments aimed at understanding the impact of upregulation a lncRNA (RP11-326A19.4) on genome-wide transcription

ORGANISM(S): Homo sapiens

2019-06-11 | GSE132451 | GEO

The Role of Non-Conserved Long Noncoding RNA, RP11-184M15.1, in Human Macrophage Function

Through deep RNA-seq of human monocyte-derived macrophages, we identified RP11-184M15.1, a human macrophage-specific lincRNA, to be highly induced in the cytoplasm of IL-4-stimulated macrophage. Preliminary data showed that treatment of IL-4-stimulated THP1 human macrophages with RP11-184M15.1 small...

ORGANISM(S): Homo sapiens

2022-11-23 | GSE218308 | GEO

dCas9 activation of RP11-326A19.4 phase 2

Transfection experiments aimed at understanding the impact of upregulating lncRNA RP11-326A19.4 on the transcriptome; follow-up of GSE132451

ORGANISM(S): Homo sapiens

2019-12-17 | GSE142097 | GEO

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2251 Results

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