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Unknown (3806)
Transcriptomics (100)
Proteomics (47)
Genomics (10)
Models (4)
Metabolomics (3)
Genomic (1)

Organisms

Homo sapiens (60)
Mus musculus (42)
Saccharomyces cerevisiae (15)
Arabidopsis thaliana (14)
Apis mellifera (6)
Equus caballus (3)
Plasmodium falciparum (2)
Medicago truncatula (2)
Aspergillus nidulans FGSC A4 (2)
Leishmania major strain Friedlin (1)
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Bacteria (1)
Mycobacterium marinum ATCC BAA-535 (1)
Porphyromonas gingivalis W83 (1)
Synechococcus sp. WH 7803 (1)

Organisms

Plasmodium falciparum 3D7 (1)
Medicago truncatula (1)

Repository

biostudies-arrayexpress (101)
pride (44)
EGA (5)
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geo (1)

Tissue

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Disease

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Technology Type

Mass Spectrometry (44)
Shotgun proteomics (23)
Bottom-up proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (5)
Top-down proteomics (4)
NMR spectroscopy (3)
Data-dependent acquisition (3)
Gel-based experiment (3)
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SRM/MRM (1)

Instrument Platform

Axon GenePix 4000B scanning hardware (6)
Nuclear Magnetic Resonance (NMR) - (2)
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2013 (17)
2014 (16)
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2011 (12)
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2005 (11)
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2015 (4)
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2019 (1)

CHEBI ID

CHEBI:15344 (2)
CHEBI:15366 (2)
CHEBI:15428 (2)
CHEBI:15603 (2)
CHEBI:15971 (2)
CHEBI:16236 (2)
CHEBI:16414 (2)
CHEBI:16737 (2)
CHEBI:16857 (2)
CHEBI:16919 (2)
CHEBI:16977 (2)
CHEBI:17295 (2)
CHEBI:17750 (2)
CHEBI:17754 (2)
CHEBI:17895 (2)
CHEBI:18050 (2)
CHEBI:22198 (2)
CHEBI:30751 (2)
CHEBI:30769 (2)
CHEBI:32816 (2)
CHEBI:422 (2)
CHEBI:70744 (2)
CHEBI:12936 (1)
CHEBI:14314 (1)
CHEBI:15318 (1)
CHEBI:15347 (1)
CHEBI:15354 (1)
CHEBI:15956 (1)
CHEBI:16015 (1)
CHEBI:16024 (1)

Metabolite Name

Acetic acid (3)
Betaine (3)
Citric acid (3)
Creatine (3)
Creatinine (3)
D-Glucose (3)
Glycine (3)
L-Alanine (3)
L-Glutamine (3)
L-Histidine (3)
L-Lactic acid (3)
L-Leucine (3)
L-Phenylalanine (3)
L-Tyrosine (3)
L-Valine (3)
Pyruvic acid (3)
1-Methylhistidine (2)
3-Hydroxybutyric acid (2)
3-Methylhistidine (2)
5-Aminolevulinic acid (2)
Acetoacetic acid (2)
Acetylcysteine (2)
Choline (2)
D-Galactose (2)
Ethanol (2)
Formic acid (2)
Glycerol (2)
Glycylproline (2)
Guanidoacetic acid (2)
L-Carnitine (2)

First Public Date

2020 (1)
2016 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (3)
Population model (1)

Lab affiliation

Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, United Kingdom (2)
Instituto de Bioingeniería, Universidad Miguel Hernández, 03202 Elche, SPAIN (2)
Laboratory of Enzymology and Molecular Biology (LEBIMO), Institute of Biology, University of Campinas (UNICAMP) (2)
Bioscience Institute,Faculty for Medical Sciences at Newcastle University. Newcastle-Upon-Tyne United Kingdom NE24HH (1)
Cellular Biology Department, Oxidative Stress and Neurodegeneration group, Ciudad Real Medical School, Castilla-La Mancha University (1)
Center for Proteomics and Metabolomics; Leiden University Medical Center; 2333 ZA Leiden, The Netherlands (1)
Centro Nacional de Biotecnología (CNB-CSIC), Darwin, 3, 28049 Madrid, Spain (1)
Centro de Biología Molecular Severo Ochoa (CBMSO), Consejo Superior de Investigaciones Científi-cas-Universidad Autónoma de Madrid (CSIC-UAM), Madrid, Spain (1)
Chair of Proteomics, Newcastle University Biosciences Institute, Medical School, Framlington Place, Newcastle-upon-Tyne, NE2 4HH, UK (1)
Chair of the Department of Functional Genomics Institute of Functional Genomics, University of Regensburg, Am Biopark 9, 93053 Regensburg, Germany (1)
Danish Cancer Institute (1)
Departamento de Genética Molecular de Plantas, Centro Nacional de Biotecnología Consejo Superior de Investigaciones Científicas, Campus Universidad Autonoma, 28049 Madrid, Spain. (1)
Department Y centro: Plant Molecular Genetics, Spanish National Center of Biotechnology (CNB-CSIC). (1)
Department of Biomedical Sciences Rue du Bugnon 7 1005 Lausanne Switzerland (1)
Department of Biomedical Sciences University of Lausanne Bugnon 7 1005 Lausanne Switzerland (1)
Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute Jena, Leibniz-HKI, Adolf-Reichwein-Str. 23, 07745 Jena, Germany (1)
Department of Pediatrics, University Medical Center Groningen, University of Groningen, The Netherlands (1)
Department of Plant Molecular Genetics National Center for Biotechnology Spanish Research Council Darwin 3 28049 Madrid Spain (1)
Functional Proteomics, ICR (1)
Head of Proteomics Unit (affiliation at the time of MS data acquisition) Spanish National Cancer Research Centre (CNIO) Address: Melchor Fernández Almagro, 3. 28029 Madrid. SPAIN (1)
IIS Biobizkaia (1)
Institute of Ageing and Chronic Disease, University of Liverpool, United Kingdom (1)
Institute of Biotechnology, University of Helsinki, Finland (1)
Laboratory for Biological Mass Spectrometry, Biosciences Institute, Newcastle University, Newcastle-upon-Tyne, NE2 4HH, UK (1)
Lehman College, Bronx, New York, USA (1)
Lung Cancer Epigenetics Research Group Max Planck Institute for Heart and Lung Research (1)
Mass Spectrometry & Proteomics Core Facility (MSPCF) Institute for Research in Biomedicine (IRB Barcelona) Barcelona Institute of Science and Technology (BIST) C/ Baldiri Reixac, 10-12 08028 Barcelona - Spain. (1)
Molecular Oncology Lab, La Paz University Hospital-IdiPAZ (1)
National Center for Biotechnology-Spanish Research Council Department of Plant Molecular Genetics Darwin 3 28049 Madrid Spain (1)
Newcastle University Biosciences Institute, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK (1)

IsPrivate

False (4)

Submitter Keywords

Immuno-oncology (2)

Classification

protozoa (1)

Study type

Transcription profiling by array (84)
ChIP-chip by tiling array (5)
RNA-seq of coding RNA (3)
ChIP-chip by array (2)
Comparative genomic hybridization by array (2)
Unknown experiment type (1)
Other (1)
ChIP-seq (1)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (507)
2021 (475)
2025 (427)
2023 (403)
2024 (346)
2020 (346)
2019 (226)
2018 (213)
2017 (143)
2016 (141)
2015 (108)
2014 (102)
2012 (77)
2013 (74)
2026 (72)
2011 (59)
2009 (50)
2010 (45)
2008 (26)
2005 (22)
2007 (12)
2006 (10)
2003 (6)
2004 (4)
2001 (4)
2002 (3)
1999 (3)
1998 (3)

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Transcription profiling of mouse 3T3-L1 adipocyte differentiation time series-3T3-L1 adipocyte differentiation timeseries

3T3-L1 adipocyte differentiation time series-3T3-L1 adipocyte differentiation timeseries. Hackl H*, Burkard T*, Sturn A, Rubio R, Schleiffer A, Tian S, Quackenbush J, Eisenhaber F, Trajanoski Z. Molecular processes during fat cell development revealed by gene expression profiling and functional a...

ORGANISM(S): Mus musculus

2005-01-01 | E-MARS-2 | biostudies-arrayexpress

Dietary folate depletion and repletion in A/J and C57BL/6J mice

Defects in homocysteine and folate metabolism are associated with increased risks for neural tube and congenital heart defects, cardiovascular disease and stroke, cancers, and neurodegeneration. In many but not all cases, dietary supplementation with folate significantly reduces the severity and in...

ORGANISM(S): Mus musculus

2008-08-27 | E-GEOD-9242 | biostudies-arrayexpress

Characteristics of RCTs focusing on health promotion in community samples: a scoping review protocol based on the d-CoSPICO framework.

Not available

S-EPMC10335424 | biostudies-literature

Characterization of the starvation response in the Arabidopsis dcl1-9 mutant

The SnRK1 protein kinase, the plant ortholog of mammalian AMPK and yeast Snf1, is activated by the energy depletion caused by adverse environmental conditions. Upon activation, SnRK1 triggers extensive transcriptional changes to restore homeostasis and promote stress tolerance and survival partly th...

ORGANISM(S): Arabidopsis thaliana

2013-07-15 | E-GEOD-46713 | biostudies-arrayexpress

A Milestone in the Chemical Synthesis of Fe₃O₄ Nanoparticles: Unreported Bulklike Properties Lead to a Remarkable Magnetic Hyperthermia.

Not available

S-EPMC8619619 | biostudies-literature

Malaria diagnosis using a combined system of a simple and fast extraction method with a lyophilised Dual-LAMP assay in a non-endemic setting.

Not available

S-EPMC10769111 | biostudies-literature

Economic burden of skin and skin structure infections due to Gram-positive bacteria in patients on hospital at home-based outpatient parenteral antibiotic therapy (OPAT).

Not available

S-EPMC10238797 | biostudies-literature

Expression data from Saccharomyces cerevisiae strains deleted for the THSC/TREX-2 subunits Thp1, Sac3 and Sus1

Transcription is a major obstacle for replication fork progression and a cause of genome instability. Such instability increases in mutants with a suboptimal assembly of the nascent messenger ribonucleo-protein particle (mRNP), as THO/TREX and the NPC-associated THSC/TREX-2 complex. We used microarr...

ORGANISM(S): Saccharomyces cerevisiae

2014-10-08 | E-GEOD-56702 | biostudies-arrayexpress

Data on polymorphisms in CYP2A6 associated to risk and predispose to smoking related variables.

Not available

S-EPMC5614716 | biostudies-literature

Metabolomic and Proteomic Stratification of Equine Osteoarthritis

Osteoarthritis (OA) is characterised by loss of articular cartilage, synovial membrane dysfunction and subchondral sclerosis. Few studies have used a global approach to stratify equine synovial fluid (SF) molecular profiles according to OA severity. SF was collected from 58 metacarpophalangeal (M...

2025-10-16 | MTBLS1645 | MetaboLights

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