Ryan Colm C - OmicsDI

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Proteomics (2)
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Transcriptomics (1)

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Homo sapiens (2)
Ciona intestinalis x Ciona robusta (2)
Rhodobacter capsulatus SB 1003 (2)
Lemna minor (2)
Achromobacter xylosoxidans A8 (2)
Nostoc sp. PCC 7120 = FACHB-418 (2)
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sludge granule bacterium 1 (2)
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biostudies-arrayexpress (2)
pride (2)

Tissue

Cell culture (2)
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Disease

Chronic myeloid leukemia (1)

Technology Type

Mass Spectrometry (2)
Bottom-up proteomics (1)
Shotgun proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (1)

Publication Date

2026 (1)
2016 (1)
2025 (1)
2018 (1)

Study type

Comparative genomic hybridization by array (1)
DNA-seq (1)

Release Date

2026 (1)
2016 (1)

Lab affiliation

Systems Biology Ireland, University College Dublin, Ireland (1)
Associate Professor Bioinformatics, UCD School of Medicine, Conway Institute, Systems Biology Ireland, University College Dublin. (1)

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A compendium of co-regulated protein complexes in breast cancer reveals collateral loss events

Protein complexes are responsible for the bulk of activities within the cell, but how their behavior and abundance varies across tumors remains poorly understood. By combining proteomic profiles of breast tumors with a large-scale protein-protein interaction network, we have identified a set of 285 ...

ORGANISM(S): Homo sapiens (Human)

2018-10-01 | PXD007543 | Pride

Paralog protein compensation preserves protein-protein interaction networks following gene loss cancer

Abstract Proteins operate within dense interconnected networks, where interactions are necessary both for stabilising proteins and enabling them to execute their molecular functions. Remarkably, the protein-protein interaction networks operating within tumour cells continue to function despite wide...

ORGANISM(S): Homo sapiens (Human)

2025-05-07 | PXD055643 | Pride

Protein-protein interaction Compensation Paralog protein Cancer.

Genome-wide CRISPR-Cas9 knockout screen in MCF10A with ATP-competitive inhibition of CDC7 (XL-413)

The coordinated activation of DNA replication origins is important for efficient DNA synthesis and genome stability. S-phase cyclin dependent kinases (CDKs) together with CDC7 kinase, are essential to origin activation by converting the pre-replicative complex into a fully active helicase. To identi...

ORGANISM(S): Homo sapiens

2026-09-30 | E-MTAB-17434 | biostudies-arrayexpress

Cells Comprising the Prostate Cancer Microenvironment Lack Recurrent Clonal Somatic Genomic Aberrations

Prostate cancer-associated stroma (CAS) plays an active role in malignant transformation, tumor progression, and metastasis. Molecular analyses of CAS have demonstrated significant changes in gene expression; however, conflicting evidence exists on whether genomic alterations in benign cells compris...