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GenomicsControl of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Arabidopsis thaliana 
2013-07-01 | E-GEOD-45939 | biostudies-arrayexpress
TranscriptomicsVibrio cholerae in human vomitus vs. human stool
Understanding gene expression by bacteria during the actual course of human infection may provide important insights into microbial pathogenesis. In this study, we evaluated the transcriptional profile of Vibrio cholerae, the causative agent of cholera, in clinical specimens from cholera patients. W...
ORGANISM(S): Vibrio cholerae 
2010-06-09 | E-GEOD-2775 | biostudies-arrayexpress
TranscriptomicsLong non-coding RNAs regulate adipogenesis (Illumina RNA-Seq)
Adipogenesis involves the regulation of hundreds of genes by several well-studied proteins, but the role of long, noncoding RNAs in this process has not been defined. We track the regulation of hundreds of lncRNAs during adipocyte differentiation, and find several that are essential for this proces...
ORGANISM(S): Mus musculus 
2013-02-15 | E-GEOD-29898 | biostudies-arrayexpress
TranscriptomicsLong non-coding RNAs regulate adipogenesis (Affymetrix)
Adipogenesis involves the regulation of hundreds of genes by several well-studied proteins, but the role of long, noncoding RNAs in this process has not been defined. We track the regulation of hundreds of lncRNAs during adipocyte differentiation, and find several that are essential for this proces...
ORGANISM(S): Mus musculus 
2013-02-15 | E-GEOD-29897 | biostudies-arrayexpress
TranscriptomicsPatterns of gene expression during Arabidopsis flower development from the time of initiation to maturation
Microarray timecourse experiments conducted across flower development from initiation of floral development to anthesis of the mature flower 3 replicates for each of 14 timepoints collected from Arabidopsis flowers using a previously described Floral Induction System, conducted using a common refere...
ORGANISM(S): Arabidopsis thaliana 
2015-07-02 | E-GEOD-64581 | biostudies-arrayexpress
TranscriptomicsControl of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS (expression)
Characterization of the activities of the transcription factor that AG encodes throughout flower development using perturbation assays in combination with a floral induction system (FIS) that allows a stage-specific analysis of flower development. The series contains static perturbation experiments ...
ORGANISM(S): Arabidopsis thaliana 
2013-07-01 | E-GEOD-44919 | biostudies-arrayexpress
TranscriptomicsAllele specific timing of replication
We have characterized allele-specific regulation of replication in human cultured primary basophilic erythroblasts using TimEX-seq. We show that in most of the genome the timing of replication of the two chromosome homologs is robustly and tightly regulated since the two alleles replicate almost at ...
ORGANISM(S): Homo sapiens 
2014-05-01 | E-GEOD-50977 | biostudies-arrayexpress
TranscriptomicsThe transcriptional pattern of Clostridium acetobutylicum following the downregulation of CAC0654 using antisense RNA
Little is known regarding the entry into and the regulation of genes during the sporulation process of clostridia. Using C. acetobutylicum as a model organism we designed an antisense RNA construct targeting the CAC0654 gene to investigate the role of this gene during sporulation and solvent format...
ORGANISM(S): Clostridium acetobutylicum 
2010-09-09 | E-GEOD-14590 | biostudies-arrayexpress
TranscriptomicsClostridium acetobutylicum ATCC 824 time course with Agilent Arrays
Using our newly designed C. acetobutylicum arrays we analyzed the mRNA changes during a time course experiment (up to 66 h) paying special attention on the study of the late timepoints. Keywords: time course Samples were taken from a Bioflow II reactor at 6, 7, 8, 9, 10, 12, 14, 16, 18, 20, 22, 24, ...
ORGANISM(S): Clostridium acetobutylicum 
2010-05-25 | E-GEOD-6094 | biostudies-arrayexpress
GenomicsIdentifying targets of DSX with DamID-seq
We have adapted the DamID protocol for use with high throughput sequencing. We have used DamID to identify the positions within the Drosophila genome where the transcription factor DSX is bound. We sequenced DpnI-digested genomic DNA from fly tissues containing UAS-Dam (control) or UAS-Dam-DsxF or ...
ORGANISM(S): Drosophila melanogaster 
2014-10-30 | E-GEOD-27269 | biostudies-arrayexpress
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