Saint - OmicsDI

Show results for

Unknown (31007)
Transcriptomics (1191)
Genomics (813)
Proteomics (342)
Metabolomics (57)
Models (6)
Clinical (3)
Genomic (2)
Other (1)

Organisms

Homo sapiens (557)
Mus musculus (222)
Rattus norvegicus (49)
Medicago truncatula (32)
Sus scrofa (32)
Bos taurus (20)
Arabidopsis thaliana (18)
Oncorhynchus mykiss (16)
Gallus gallus (16)
Saccharomyces cerevisiae (13)
Vitis vinifera (10)
Lactococcus lactis (8)
Malus domestica (8)
Drosophila melanogaster (8)
Danio rerio (8)
Triticum aestivum (7)
Macaca fascicularis (6)
Canis lupus familiaris (6)
Podospora anserina (5)
Apis mellifera (5)
Salmo salar (5)
Neisseria gonorrhoeae (4)
Bacillus subtilis subsp. subtilis str. 168 (4)
Phallusia mammillata (4)
Solanum tuberosum (4)
Candida albicans (4)
Lemna minor (3)
groundwater metagenome (3)
Scophthalmus maximus (3)
Helianthus annuus (3)

Organisms

Homo sapiens (114)
Mus musculus (100)
Drosophila melanogaster (17)
Escherichia coli (8)
Klebsiella pneumoniae (6)
Listeria monocytogenes (5)
freshwater metagenome (5)
Rattus norvegicus (5)
Saccharomyces cerevisiae (5)
Megophrys montana (4)
Anomalurus derbianus (4)
Pedetes capensis (4)
Cryptococcus neoformans (4)
Coxiella burnetii (4)
Leptospira interrogans (4)
Cyclura pinguis (3)
Balaenoptera musculus (3)
Platysternon megacephalum (3)
Cryptobranchus alleganiensis (3)
Artibeus lituratus (3)
Chitra chitra (3)
Dermatemys mawii (3)
Castor canadensis (3)
Neisseria gonorrhoeae (3)
Helicobacter pylori (3)
Salmonella enterica subsp. enterica (3)
Solanum tuberosum (3)
Ehrlichia chaffeensis str. Saint Vincent (2)
178876 (2)
Hippotragus niger (2)

Repository

biostudies-arrayexpress (1248)
ENA (728)
pride (278)
MassIVE (54)
MetaboLights (54)
EGA (33)
geo (7)
BioModels (6)
GNPS (3)
dbGaP (2)
EVA (2)
PAXDB (2)
GPMDB (1)
PanoramaPublic (1)

Tissue

Cell culture (67)
Epithelial cell (29)
Permanent cell line cell (16)
Plant cell (14)
Brain (13)
Blood plasma (11)
Blood (10)
Cell suspension culture (10)
Heart (7)
Kidney (7)
Embryo (6)
Leaf (6)
Liver (6)
T cell (6)
Whole body (5)
Blood serum (4)
Cerebrospinal fluid (4)
Colon (4)
Early embryonic cell (4)
Embryonic stem cell (4)
HeLa cell (4)
Hepatocyte (4)
Melanocyte (4)
Urine (4)
B cell (3)
Breast (3)
Diploid cell (3)
Kidney cell (3)
Leukocyte (3)
Primary cell (3)

Disease

Normal (16)
Neuroblastoma (3)
Papillary thyroid carcinoma (2)
Head and neck squamous cell carcinoma (2)
Diabetes mellitus (2)
Diabetes mellitus type 1 (1)
Dermal neurofibroma (1)
Anaplastic large cell lymphoma has DiseaseStaging II (1)
Epithelioid mesothelioma (1)
Large cell carcinoma (1)
Invasive pituitary adenoma (1)
Extranodal NK/T-Cell Lymphoma derived cell line (1)
CUP (1)
Ependymoma (1)
Autoimmune disorder (1)
Myasthenia gravis (seropositive patient with low thymic hyperplasia) (1)
Precursor T lymphoblastic leukemia (1)
Hypertension (1)
Limited cutaneous subset (1)
Infected with Influenza A/WSN/33 (H1N1) (1)
Hepatoblastoma (1)
Primary tumor (1)
Breast adenocarcinoma (1)
Bladder tumour (1)
Small cell lung cancer (1)
Lung large cell carcinoma (1)
Follicular thyroid adenoma (1)
Maligant fibrousd histiocytoma post larynx carcinoma (1)
Type 1 Diabetes Mellitus (1)
Adrenocortical Adenoma (1)

Technology Type

Mass Spectrometry (278)
Shotgun proteomics (129)
Affinity purification coupled with mass spectrometry proteomics (89)
Bottom-up proteomics (48)
Mass spectrometry (36)
Data-dependent acquisition (21)
Gel-based experiment (15)
Data-independent acquisition (14)
SWATH MS (9)
Mass spectrometry assay (7)
Top-down proteomics (7)
NMR spectroscopy assay (6)
NMR spectroscopy (6)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
DiaPASEF (3)
Mass spectrometry imaging (3)
Affinity proteomics (2)
All-ion fragmentation (2)
HDMSE (2)
ILLUMINA, Affymetrix HG_U133_+2, HUMANOMNIEXPRESS, Illumina HiSeq 2000 (1)
Illumina Human Custom 1, Illumina Human-Ref-8 v3 beadchip, 2M and Human 610 Quad Custom arrays (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
MSE (1)

Instrument Platform

Illumina NovaSeq 6000 (40)
Illumina HiSeq 2500 (31)
Illumina HiSeq 2000 (29)
NextSeq 500 (28)
Illumina HiSeq 4000 (27)
NextSeq 550 (9)
NextSeq 2000 (7)
Illumina HiSeq 1500 (7)
Illumina MiSeq (7)
Illumina Genome Analyzer II (6)
Illumina Genome Analyzer IIx (3)
Scanning hardware (3)
Illumina HiSeq 3000 (3)
MA900, Sony (2)
10x Chromium Controller (2)
Agilent Microarray Hybridization Chamber Kit and Hybridization oven rotator (2)
Axon GenePix 4000A scanning hardware (2)
FUJIFILM BAS-5000 scanning hardware (2)
Other (2)
Axon- GenePix4000B (2)
418 [Affymetrix] (2)
ScanArray Express HT [PerkinElmer] (2)
Illumina NovaSeq X (2)
Illumina NextSeq2000 (2x100bp) (1)
Single nuclei were captured using the 10x Genomics Chromium Controller. (1)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (1)
RapidPURE RNA Plant Kit (MP Biomedicals, Illkirch, France) (1)
FastPrep-24 homogeniser (1)
HiSeq 2500 Illumina (1)
Illumina MethylationEPIC BeadChip platform (Illumina, San Diego, CA, USA) (1)

Publication Date

2014 (141)
2010 (136)
2013 (130)
2011 (119)
2012 (114)
2015 (113)
2022 (85)
2024 (73)
2021 (73)
2016 (72)
2025 (71)
2023 (70)
2020 (68)
2009 (61)
2018 (58)
2019 (55)
2017 (52)
2026 (51)
2008 (47)
2007 (28)
2005 (18)
2006 (15)
2004 (4)
2003 (1)

UNIPROT ID/AC

1433B_MOUSE (2)
1433E_MOUSE (2)
1433F_MOUSE (2)
1433G_MOUSE (2)
1433T_MOUSE (2)
1433Z_MOUSE (2)
2AAA_MOUSE (2)
2AAB_MOUSE (2)
3HIDH_MOUSE (2)
4F2_MOUSE (2)
5NT3B_MOUSE (2)
5NTC_MOUSE (2)
6PGD_MOUSE (2)
6PGL_MOUSE (2)
A16A1_MOUSE (2)
AAAT_MOUSE (2)
AATC_MOUSE (2)
AATM_MOUSE (2)
ABCB7_MOUSE (2)
ABCE1_MOUSE (2)
ABCF1_MOUSE (2)
ABCF2_MOUSE (2)
ACACA_MOUSE (2)
ACAD9_MOUSE (2)
ACADL_MOUSE (2)
ACADM_MOUSE (2)
ACADS_MOUSE (2)
ACBP_MOUSE (2)
ACINU_MOUSE (2)
ACL6A_MOUSE (2)

CHEBI ID

CHEBI:30769 (22)
CHEBI:28300 (19)
CHEBI:25017 (17)
CHEBI:6650 (17)
CHEBI:32816 (16)
CHEBI:30915 (16)
CHEBI:16919 (15)
CHEBI:16811 (15)
CHEBI:28044 (15)
CHEBI:16335 (15)
CHEBI:16704 (15)
CHEBI:15354 (15)
CHEBI:17596 (15)
CHEBI:17992 (14)
CHEBI:17822 (14)
CHEBI:18237 (14)
CHEBI:22660 (14)
CHEBI:16761 (8)
CHEBI:4167 (7)
CHEBI:15846 (6)
CHEBI:5656 (1)
CHEBI:17287 (1)
CHEBI:422 (1)
CHEBI:29101 (1)
CHEBI:15379 (1)
CHEBI:29052 (1)
CHEBI:15361 (1)
CHEBI:15422 (1)
CHEBI:16908 (1)
CHEBI:18021 (1)

Metabolite Name

Choline (10)
Glutamine (9)
Leucine (8)
Taurine (8)
Inosine (8)
Alanine (8)
Isoleucine (8)
AMP (7)
Tyrosine (7)
Creatine (7)
Glycine (7)
Valine (7)
Alpha-ketoglutarate (7)
Lactate (7)
Succinate (7)
Phenylalanine (7)
Creatine (7)
Hippurate (6)
Beta-hydroxyisovalerate (6)
Uridine (6)
Allantoin (6)
Adenine (6)
Phenylalanine (6)
Creatinine (6)
Lactate (6)
Leucine (6)
Uracil (6)
Beta-alanine (6)
Spermidine (6)
Methionine (6)

First Public Date

2024 (109)
2026 (87)
2023 (85)
2025 (76)
2020 (65)
2021 (54)
2014 (49)
2019 (48)
2022 (46)
2013 (31)
2017 (26)
2018 (22)
2015 (16)
2016 (14)

Modelling Approach

Ordinary differential equation model (5)
Constraint-based model (1)

Study status

Ongoing (1)
Active, not recruiting (1)
Recruiting (1)

Lab affiliation

CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (4)
Professor. Department of Biology and Biological Engineering, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Wallenberg Center for Protein Research, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Lyngby, Denmark (4)
Biology department, Washington University in Saint Louis, Saint Louis, MO, USA (3)
Kubicek lab, Principal Investigator, Head of Molecular Discovery Platform, CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria (3)
Washington University in Saint Louis (3)
Biology Department University of Massachusetts Boston Boston, USA (2)
Biology Department, University of Massachusetts Boston, USA (2)
Brigham Young University (2)
Cancer Research Center of Toulouse, INSERM UMR 1037, 31037 Toulouse, France Université Toulouse III Paul Sabatier, 31330 Toulouse, France (2)
Department of Biology, Institute of Biochemistry, ETH Zurich, Switzerland (2)
Department of Biology, Washington University in St. Louis, St. Louis, MO, USA (2)
Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany (2)
Department of Chemistry, Washington University in Saint Louis (2)
Department of Molecular Biology and Genetics, Gebze Technical University, 41400, Kocaeli, Turkey (2)
Department of Molecular Biology, Princeton University, USA (2)
Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA. (2)
Departments of Immunology and Cell Biology Faculty of Medicine and Health Sciences Université de Sherbrooke Sherbrooke, QC J1H 5N4 Canada (2)
Developmental Biology, Institute of Biodynamics and Biocomplexity, Department of Biology, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands (2)
Florida Research and Innovation Center, Cleveland Clinic, Port Saint Lucie, FL 34987, USA (2)
Inserm U1016, Institut Cochin, 24 rue du Faubourg Saint-Jacques, 75014 PARIS, FRANCE. (2)
Institute of genetics and developmental biology (2)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (2)
LBPC-PPC, Montpellier University, IRMB CHU Montpellier, INM INSERM, Montpellier, Occitanie, France (2)
Ottawa Institute of Systems Biology and Department of Biochemistry, Microbiology and Immunology, Faculty of Medicine, University of Ottawa, Ottawa, Ontario, Canada (2)
Porto Conte Ricerche S.r.l. (2)
Professor of Chemistry, Immunology, Medicine Department of Chemistry, MSC 1134-196-525 Washington University in St. Louis One Brookings Drive St. Louis, Mo 63130 Phone: 314-935-4814; Fax: 314-935-7484 Dept: https://chemistry.wustl.edu/people/michael-l-gross Lab: https://mgrosslab.com/ (2)
Protim Core facility - Irset Inserm U1085 - UAR Biosit CNRS 380 Inserm 018 (2)
The Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287 USA (2)
"Mitochondria, Metals and Oxidative Stress" group leader Head "Mass Spectrometry Lab and Proteomics core Facility" Jacques Monod Institute UMR7592 CNRS - Paris Diderot University 15 rue Hélène Brion 75205 Paris Cedex 13, FRANCE tel : 33(1)57278029 (1)
1. Paris-Cité university, Cochin institute CNRS UMR8104, Inserm U1016, 24 rue du faubourg Saint Jacques 75014 Paris, France 2. Department of Endocrinology and National Reference Center for Rare Adrenal Disorders, Cochin hospital, Assistance Publique Hôpitaux de Paris, 24 rue du faubourg Saint Jacques 75014 Paris, France (1)