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MetabolomicsEndoplasmic reticulum-derived bodies enable a single-cell chemical defense in Brassicaceae plants
Brassicaceae plants have a dual-cell type of chemical defense against herbivory. Here we show a novel single-cell defense involving endoplasmic reticulum (ER)-derived organelles (ER bodies) and the vacuoles. We identify various glucosinolates as endogenous substrates of the ER-body β-glucosidases BG...
2020-02-04 | MTBLS1383 | MetaboLights
TranscriptomicsTranscription profiling of liver from p38aDhep, IkkbDhep, and control mice 4h after injection of diethylnitrosamine
Analysis of microarray data from livers 4 hr after DEN administration revealed changes in the expression of several genes relevant to regulation of reactive oxygen species (ROS) accumulation, cell death, and cell cycle control.
ORGANISM(S): Mus musculus 
2008-05-23 | E-TABM-351 | biostudies-arrayexpress
TranscriptomicsDevelopment of a high-density oligo microarray of cassava, an important tropical crop
We developed a 60-mer oligonucleotide Agilent microarray representing about 20,000 cassava genes and applied it to expression profiling under drought stress. We demonstrated that our microarray is an useful tool for analyzing the cassava transcriptome and that it can be applied to various cassava sp...
ORGANISM(S): Manihot esculenta subsp. peruviana 
2012-06-14 | E-GEOD-31749 | biostudies-arrayexpress
TranscriptomicsExpression data from various tomato plant tissues
Gene-to-gene coexpression analysis is a powerful approach to infer function of uncharacterized genes. To perform non-targeted coexpression analysis of tomato genes, we collected a developmental gene expression dataset using various tissues of tomato plant. Expression data are collected from 24 diffe...
ORGANISM(S): Solanum lycopersicum 
2010-02-21 | E-GEOD-19326 | biostudies-arrayexpress
MetabolomicsDefective cytokinin signaling reprograms lipid and flavonoid gene-to-metabolite networks to mitigate high salinity in Arabidopsis

Cytokinin (CK) in plants regulates both developmental processes and adaptation to environmental stress. Arabidopsis histidine phosphotransfer ahp2,3,5 and type-B response regulator arr1,10,12 triple mutants are almost completely defective in CK signaling, and the ahp2,3,5

2021-11-25 | MTBLS2532 | MetaboLights
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