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TranscriptomicsGlobal Identification of Noncoding RNAs in S. cerevisiae
Genome-wide detection of novel non-coding RNAs in S. cerevisiae by modulating an RNase P pathway through the depletion of a component RPP1. Nearly 400,000 36-mer oligonucleotide probes, tiling the entire yeast genome including the mitochondrial chromosome with an average gap of 10 bases between two ...
ORGANISM(S): Saccharomyces cerevisiae 
2006-02-28 | E-GEOD-4275 | biostudies-arrayexpress
TranscriptomicsEvidence for Antisense Transcription Associated with microRNAs in Arabidopsis
Exploring miRNA-related antisense transcription in Arabidopsis through RNA transcript profiling of smRNA pathway-defective mutants on a custom high-resolution oligonucleotide array. Two custom arrays were designed with 15,000 oligonucleotide (25-mer and 36-mer) probes in each array. The probes were ...
ORGANISM(S): Arabidopsis thaliana 
2009-04-10 | E-GEOD-15199 | biostudies-arrayexpress
TranscriptomicsProfiling the transcriptome of Thalassiosira pseudonana under environmentally relevant growth conditions
T. pseudonana gene-specific arrays were used for differential gene expression. Seven hundred nine genes were differentially expressed by more than 2-fold (Bayesian t-test, p< 0.001) under at least one growth-limiting condition relative to nutrient-replete conditions. A striking result of the hierarc...
ORGANISM(S): Thalassiosira pseudonana CCMP1335 
2010-05-26 | E-GEOD-9660 | biostudies-arrayexpress
TranscriptomicsProfiling the transcriptome of Thalassiosira pseudonana under silicon replete and deplete growth.
T. pseudonana tiling arrays were used to validate gene models and to predict new genes in the genome of this diatom. The tiling array data validated transcription of about 41% (4,653) of the 11,390 computationally predicted genes. An additional 1,132 transcripts were identified that did not correspo...
ORGANISM(S): Thalassiosira pseudonana CCMP1335 
2010-05-26 | E-GEOD-9661 | biostudies-arrayexpress
TranscriptomicsArabidopsis Whole Genome 36-mer
Identification of novel transcribed sequences in Arabidopsis thaliana using high density genome tiling arrays.
ORGANISM(S): Arabidopsis thaliana 
2005-02-09 | E-GEOD-2247 | biostudies-arrayexpress
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