Sort   by:  
 Page size 
ProteomicsProteomeTools â?? Part II - Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning
"The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the second iteration of the generation and multimodal LC-MS/MS analysis of >220,000 synthetic tryptic peptides representing nearly all c...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2020-07-21 | MSV000085805 | MassIVE
ProteomicsProsit: Proteome-wide prediction of peptide tandem mass spectra by deep learning
In this study, we extended the ProteomeTools peptide library (PROPEL, see PXD004732 and PXD010595) to train a deep neural network resulting in chromatographic retention time and fragment ion intensity predictions for (tryptic) peptides that exceed the quality of the experimental data.
ORGANISM(S): Drosophila Melanogaster (ncbitaxon:7227) Escherichia Coli (ncbitaxon:562) Saccharomyces Cerevisiae (ncbitaxon:4932) Homo Sapiens (ncbitaxon:9606) Caenorhabditis Elegans (ncbitaxon:6239) 
2021-03-12 | MSV000087047 | MassIVE
ProteomicsA.thaliana - Rosette, SC (Mergneretal,scidata2020)
abundance based on Spectral counting, Interaction consistency score: 10.2, Coverage: 33
ORGANISM(S): 3702 
2020-00-00 | 4072941425 | PAXDB
ProteomicsA.thaliana - Seed, SC (Mergneretal,scidata2020)
abundance based on Spectral counting, Interaction consistency score: 14.1, Coverage: 41
ORGANISM(S): 3702 
2020-00-00 | 146772377 | PAXDB
ProteomicsA.thaliana - Flower, SC (Mergneretal,scidata2020)
abundance based on Spectral counting, Interaction consistency score: 9.2, Coverage: 35
ORGANISM(S): 3702 
2020-00-00 | 267743100 | PAXDB
ProteomicsA.thaliana - Silique, SC (Mergneretal,scidata2020)
abundance based on Spectral counting, Interaction consistency score: 13.7, Coverage: 41
ORGANISM(S): 3702 
2020-00-00 | 2516394065 | PAXDB
ProteomicsMass spectrometry-based draft of the mouse proteome
Quantitative draft map of the proteomes of 41 healthy tissues of the animal model Mus musculus and a panel of 66 murine pancreatic ductal adenocarcinoma cell lines and. Our in-depth analysis provides evidence for proteins encoded by >16,000 genes (~76% of the total annotated protein-coding genes), w...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2022-07-09 | MSV000089856 | MassIVE
Sort   by:  
 Page size