Sort   by:  
 Page size 
ProteomicsSamavarchiTehrani_P112_VS4_Viral_BioID_Benchmark_human
This submission contains the mass spectrometry files for the manuscript by Samavarchi-Tehrani et al. that describes the use of lentiviral delivery of BirA*-tagged transgenes into HeLa, BJ and MEF cells or in comparison to stably integrated transgene in Flp-In T-REx HeLa cell lines. This submission ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2018-06-01 | MSV000082430 | MassIVE
ProteomicsSamavarchiTehrani_P112_VS4_Viral_BioID_Benchmark_mouse
This submission contains the mass spectrometry files for the manuscript by Samavarchi-Tehrani et al. that describes the use of lentiviral delivery of BirA*-tagged transgenes into HeLa, BJ and MEF cells or in comparison to stably integrated transgene in Flp-In T-REx HeLa cell lines. This submission ...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2018-06-01 | MSV000082429 | MassIVE
TranscriptomicsAn Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming [protein binding microarray]
Alternative splicing (AS) is a key process underlying the expansion of proteomic diversity and the regulation of gene expression. However, the contribution of AS to the control of embryonic stem cell (ESC) pluripotency is not well understood. Here, we identify an evolutionarily conserved ESC-specifi...
ORGANISM(S): Homo sapiens 
2011-09-14 | E-GEOD-31007 | biostudies-arrayexpress
TranscriptomicsAn Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming [RNA-Seq]
Alternative splicing (AS) is a key process underlying the expansion of proteomic diversity and the regulation of gene expression. However, the contribution of AS to the control of embryonic stem cell (ESC) pluripotency is not well understood. Here, we identify an evolutionarily conserved ESC-specifi...
ORGANISM(S): Homo sapiens 
2011-09-14 | E-GEOD-30995 | biostudies-arrayexpress
GenomicsAn Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming [ChIP-Seq]
Alternative splicing (AS) is a key process underlying the expansion of proteomic diversity and the regulation of gene expression. However, the contribution of AS to the control of embryonic stem cell (ESC) pluripotency is not well understood. Here, we identify an evolutionarily conserved ESC-specifi...
ORGANISM(S): Homo sapiens 
2011-09-14 | E-GEOD-31006 | biostudies-arrayexpress
TranscriptomicsAn Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming [AS microarray]
Alternative splicing (AS) is a key process underlying the expansion of proteomic diversity and the regulation of gene expression. However, the contribution of AS to the control of embryonic stem cell (ESC) pluripotency is not well understood. Here, we identify an evolutionarily conserved ESC-specifi...
ORGANISM(S): Homo sapiens 
2011-09-14 | E-GEOD-31948 | biostudies-arrayexpress
TranscriptomicsExpression data throughout reprogramming of MEF to iPS using a Dox-inducible promoter
6C secondary MEFs were treated with Dox in mES media to turn on the Oct4, Klf4, cMyc, Sox2. Total RNA was extracted at day 0 (no Dox), day2, 5, 8, 11, 16 and 21 (with Dox) and day 30 (Dox-independent secondary iPS). RNA from Parental MEFs and Primary-iPS cells were also extracted for reference. 1B s...
ORGANISM(S): Mus musculus 
2010-07-30 | E-GEOD-21757 | biostudies-arrayexpress
ProteomicsUuskula_P112_VS2_TOP2B_BioID_15JUN2015
This submission contains the mass spectrometry files for the manuscript by Uuskula-Reimand et al. that investigates the interactome of TOP2B using BioID and its genomic binding profile. This submission contains 18 IDA files for the following baits: empty 3XFLAG control, GFP-BirA-FLAG control, NLS-Bi...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2015-07-10 | MSV000079188 | MassIVE
ProteomicsGo_BioID_humancellmap_HEK293_highSDS_2019
This dataset consists of 404 raw MS files and associated peak lists and result files, acquired on Velos Orbitrap Elite mass spectrometer operated in Data Dependent Acquisition mode. All samples are BioID experiments, performed in HEK293 Flp-In T-REx cells from organellar and other subcellular marke...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000084360 | MassIVE
ProteomicsGo_BioID_humancellmap_HEK293_lowSDS_2019
This dataset consists of 68 raw MS files and associated peak lists and result files, acquired on Velos Orbitrap Elite mass spectrometer operated in Data Dependent Acquisition mode. All samples are BioID experiments, performed in HEK293 Flp-In T-REx cells from organellar and other subcellular marker...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000084359 | MassIVE
Sort   by:  
 Page size