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TranscriptomicsThymine starvation and limitation in Escherichia coli thyA- cells
Transcriptional profiling of responses of E. coli thymine auxotrophs to i) growth under sub-optimal thymine concentration (TLM) and ii) lethal conditions under complete thymine starvation (TLD). Thymine limitation: Time series following shift to limiting thymine concentrations (15, 30, 45, 60 and 90...
ORGANISM(S): Escherichia coli 
2010-05-14 | E-GEOD-19879 | biostudies-arrayexpress
TranscriptomicsBj Paraquat fulminant shock vs. non-treatment
Genome-wide transcriptional profiling of cells subjected to a paraquat fulminant shock treatment (5mM for 10 minutes). Three independent biological materials were prepared for cells shock treated with paraquat and non-treated cells. A total 6 arrays which includes dye swap were analyzed.
ORGANISM(S): Bradyrhizobium japonicum USDA 110 
2011-05-15 | E-GEOD-26236 | biostudies-arrayexpress
TranscriptomicsBj Paraquat prolonged exposure vs. non-treatment
Genome-wide transcriptional profiling of cells exposed to 0.1 mM paraquat from time of inoculation. Three independent biological materials were prepared for cells exposed to 0.1 mM paraquat during growth and non-treated cells. A total 6 arrays which includes dye swap were analyzed.
ORGANISM(S): Bradyrhizobium japonicum USDA 110 
2011-05-15 | E-GEOD-26252 | biostudies-arrayexpress
TranscriptomicsTrimethoprim response in Escherichia coli in bacteriostatic and bactericidal conditions
Transcriptional profiling of E. coli MG1655 to Trimethoprim in i) LB media, ii) M9 minimal media and iii) M9 minimal media with supplements to study the association of gene expression with corresponding lethal and non-lethal growth conditions. Supplementation conditions in M9 media included addition...
ORGANISM(S): Escherichia coli 
2011-10-03 | E-GEOD-32562 | biostudies-arrayexpress
TranscriptomicsEcoli DH5alpha, pUC overexpression in LB + Amp vs no pUC
Responses of Escherichia coli DH5alpha as they overexpress pUC at different ODs in LB + Amp Escherichia coli DH5alpha expressing pUC sampled at different ODs (0.2, 0.5, 0.9) in LB + Amp vs cells not producing pUC
ORGANISM(S): Escherichia coli 
2010-07-01 | E-GEOD-4379 | biostudies-arrayexpress
TranscriptomicsBradyrhizobium japonicum_Bacteroids vs. Bacteria grown in HM-Arabinose
A transcriptomic analysis of bacteroids isolated from soybean plants inoculated with B. japonicum USDA 110, relative to cells cultured in HM-arabinose medium was performed and the results combined with two other transcriptomic analyses to form a reiterated pool of transcripts that define genes essen...
ORGANISM(S): Bradyrhizobium diazoefficiens USDA 110 
2014-11-01 | E-GEOD-60279 | biostudies-arrayexpress
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