Sarkar J J - OmicsDI

OmicsDI

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Unknown (1158)
Proteomics (26)
Transcriptomics (9)
Metabolomics (6)
Models (2)
Multiomics (2)
Genomics (1)

Organisms

Homo sapiens (12)
Mus musculus (10)
Protofrankia coriariae (2)
Severe acute respiratory syndrome coronavirus 2 (1)
Schizosaccharomyces pombe (1)
Rattus norvegicus (1)
Burkholderia pseudomallei K96243 (1)
Coxiella burnetii Dugway 5J108-111 (1)
Drosophila melanogaster (1)
Saccharomyces cerevisiae (1)
Schizophyllum commune (1)
Staphylococcus aureus (1)

Repository

pride (21)
biostudies-arrayexpress (10)
MassIVE (5)
MetaboLights (4)
BioModels (2)
GNPS (2)

Tissue

Blood plasma (3)
Cell culture (3)
Abdomen (1)
Blood cell (1)
Brain (1)
CD8-positive (1)
Epithelial cell (1)
MIN6-N8 cell (1)
Mammary gland tumor cell (1)
Pancreatic islet (1)
Permanent cell line cell (1)
Spleen (1)
Thorax (1)

Disease

COVID-19 (3)
Type 1 diabetes mellitus (2)
Breast cancer (1)
Parkinson's disease (1)
Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (21)
Bottom-up proteomics (10)
Shotgun proteomics (5)
Mass spectrometry (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-dependent acquisition (2)
Data-independent acquisition (2)
SWATH MS (2)
DiaPASEF (1)
Gel-based experiment (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (3)
6520A Quadrupole Time-of-Flight LC/MS (2)
Orbitrap Fusion Lumos (2)
Liquid Chromatography MS - positive - reverse phase (2)
Axon GenePix 4000B scanning hardware (1)
Orbitrap Fusion ETD (1)
Q Exactive (1)
Q Exactive HF-X (1)
Q-Exactive (1)

Publication Date

2024 (7)
2026 (6)
2014 (5)
2023 (5)
2025 (5)
2020 (4)
2013 (2)
2022 (2)
2017 (2)
2012 (1)
2010 (1)
2008 (1)
2016 (1)
2015 (1)
2021 (1)

CHEBI ID

CHEBI:136085 (2)
CHEBI:17351 (2)
CHEBI:72998 (2)
CHEBI:10043 (1)
CHEBI:133003 (1)
CHEBI:136088 (1)
CHEBI:136143 (1)
CHEBI:136195 (1)
CHEBI:136241 (1)
CHEBI:138448 (1)
CHEBI:15354 (1)
CHEBI:15682 (1)
CHEBI:15698 (1)
CHEBI:15727 (1)
CHEBI:15760 (1)
CHEBI:15843 (1)
CHEBI:1606 (1)
CHEBI:16217 (1)
CHEBI:16359 (1)
CHEBI:16374 (1)
CHEBI:16450 (1)
CHEBI:16566 (1)
CHEBI:16827 (1)
CHEBI:16852 (1)
CHEBI:16962 (1)
CHEBI:16973 (1)
CHEBI:17154 (1)
CHEBI:17164 (1)
CHEBI:17196 (1)
CHEBI:17252 (1)

Metabolite Name

Linoleic acid (2)
PC(16:0/0:0) (2)
PC(18:2/18:2) (2)
2-Hydroxymyristic acid (1)
2-Isopropylmalic acid (1)
3,4-Dihydroxyphenylpropionic acid (1)
3alpha-hydroxy-5alpha-androstan-17-one 3-sulfate (1)
4-Pyridoxic acid (1)
Arachidonic acid (1)
Ascorbic acid (1)
Cholic acid (1)
Chrysin (1)
Cis-13-docosenoic acid (1)
Cis-5-dodecenoic acid (1)
Cis-Aconitic acid (1)
D-Glucono-1,5-lactone (1)
Folic acid (1)
Gluconolactone (1)
Lauric acid (1)
Methylmalonate (1)
PC(16:0/18:2) (1)
PC(18:2/20:4) (1)
PC(O-16:0/20:4) (1)
PE(20:4/0:0) (1)
PE(P-16:0/20:4) (1)
PI(16:0/18:1) (1)
Quercetin-3beta-D-glucoside (1)
Stachyose (1)
Tyrosol (1)
Undecylenic acid (1)

IsPrivate

False (2)

Submitter Keywords

COVID-19 (1)

Modelling Approach

Constraint-based model (1)
Population model (1)

Study type

Transcription profiling by array (8)
ChIP-seq (1)
RNA-seq of coding RNA (1)

Release Date

2022 (139)
2023 (137)
2024 (136)
2021 (132)
2025 (126)
2020 (96)
2019 (69)
2018 (56)
2017 (53)
2014 (42)
2016 (37)
2015 (34)
2013 (25)
2012 (24)
2026 (19)
2011 (11)
2009 (11)
2010 (10)
2008 (5)
2007 (2)
2004 (2)
2006 (1)
2002 (1)

Lab affiliation

CEA-Marcoule, DRF-SPI-Li2D (2)
Pacific Northwest National Laboratory (2)
Transcription and Disease Laboratory, Molecular Biology and Genetics Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, Karnataka, India (2)
, Dana-Farber Cancer Institute, Harvard Medical School 360 Longwood Avenue Longwood Center, LC4117 Boston, MA 02215 (1)
1Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, 160 College Street, Toronto, Ontario M5S 3E1, Canada 2Department of Molecular Genetics, University of Toronto, 1 King's College Circle, Toronto, Ontario M5S 1A8, Canada Departments of Biochemistry and Biology, Boston University, 71 E. Concord St, Boston, MA 02118, USA (1)
CSIR-CCMB (1)
Department of Molecular Biology, Cristea Lab, Princeton University, Princeton, NJ, US (lab head) (1)
Department of Pathology and Laboratory Medicine, University of Cincinnati, Cincinnati, OH, USA (1)
Department of Radiation Oncology Winthrop P. Rockefeller Cancer Institute University of Arkansas for Medical Sciences, USA (1)
Dipyaman Ganguly, IICB-Translational Research Unit of Excellence, CSIR-Indian Institute of Chemical Biology, Kolkata, West Bengal , India, 700091 (1)
Envi-Gene Lab, Department of Environmental Medicine, University of Rochester School of Medicine and Dentistry, Rochester, New York, USA (1)
IICB-Translational Research Unit of Excellence, CSIR-Indian Institute of Chemical Biology,Kolkata, India (1)
Marshall Centre for Infectious Disease Research and Training, School of Biomedical Sciences, The University of Western Australia, Nedlands, Western Australia, 6009, Australia (1)
Marshall Centre for Infectious Diseases Research and Training, School of Biomedical Sciences, University of Western Australia, Perth, Western Australia, Australia (1)
Mass Spectrometry Technology Access Center, McDonnell Genome Institute, Washington University School of Medicine (1)
National Research Council of Italy – Water Research Institute (CNR-IRSA) Molecular Ecology Group (MEG), Verbania, Italy (1)
Senior Scientist, Pharmacology Division, CSIR- Central Drug Research Institute (CDRI), Lucknow-226031, Uttar Pradesh, India. (1)
Umea University (1)