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Unknown (2647)
Transcriptomics (272)
Proteomics (59)
Metabolomics (28)
Genomics (26)
Models (2)

Organisms

Homo sapiens (131)
Mus musculus (124)
Oryza sativa Japonica Group (19)
Rattus norvegicus (17)
Arabidopsis thaliana (15)
Caenorhabditis elegans (6)
Drosophila melanogaster (4)
Medicago truncatula (3)
Lotus japonicus (3)
Macaca mulatta (2)
Gallus gallus (2)
Saccharomyces cerevisiae (2)
Rattus rattus (2)
Escherichia coli (2)
Oryctolagus cuniculus (1)
Saccharum hybrid cultivar (mixed) (1)
Aspergillus oryzae RIB40 (1)
Bombyx mori (1)
Daphnia pulex (1)
Entamoeba histolytica (1)
Oryza sativa (1)
Bacillus subtilis (1)
Hordeum vulgare (1)
Oncorhynchus mykiss (1)
cellular organisms (1)
Anaerostipes caccae (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Bacteroides thetaiotaomicron (1)
Bifidobacterium longum subsp. longum (1)
Blautia producta ATCC 27340 = DSM 2950 (1)

Organisms

Homo sapiens (2)
Sinorhizobium meliloti 1021 (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (288)
pride (29)
MetaboLights (28)
jPOST (25)
ENA (7)
MassIVE (5)
BioModels (2)
EGA (2)
geo (1)

Tissue

Cell culture (8)
Blood plasma (4)
Brain (2)
Liver (2)
Bone marrow (1)
Brown preadipocyte (1)
Colon (1)
Egg (1)
Embryonic stem cell (1)
Erythrocyte (1)
Fibroblast (1)
Heart (1)
Intestinal wall (1)
Neuron (1)
Preadipocyte (1)
Sciatic nerve (1)
Spinal cord (1)
Stem cell (1)
Whole body (1)

Disease

Colon cancer (2)
Disease free (2)
Arrhythmogenic right ventricular cardiomyopathy (1)
Sickle cell anemia (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (29)
Mass spectrometry (25)
Shotgun proteomics (13)
Bottom-up proteomics (7)
NMR spectroscopy (3)
Gel-based experiment (3)
Data-dependent acquisition (2)
SWATH MS (2)
Illumina HiSeq 2000, Infinium HumanMethylation450 BeadChip (1)
Mass spectrometry assay (1)
Affinity proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
Mass spectrometry imaging (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (11)
Liquid Chromatography MS - positive - reverse phase (9)
NextSeq 500 (7)
Liquid Chromatography MS - negative - reverse phase (6)
Liquid Chromatography MS - negative - hilic (4)
Liquid Chromatography MS - positive - hilic (4)
Illumina HiSeq 2500 (3)
Capillary electrophoresis MS - negative (3)
Capillary electrophoresis MS - positive (3)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - alternating (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Nuclear Magnetic Resonance (NMR) - (2)
Microcentrifuge (1)
ScanArray scanning hardware (1)
DNBSEQ-T7 (1)
Illumina HiSeq 4000 (1)
LTQ (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Q Exactive Plus (1)
Agilent 6520 QTOF (1)
Bruker (1)
Flow Injection Analysis MS - Positive (FIA-MS (Positive)) (1)
LTQ FT ULTRA (Thermo Scientific) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2013 (47)
2012 (46)
2014 (45)
2015 (35)
2022 (26)
2023 (24)
2010 (23)
2011 (21)
2016 (19)
2008 (14)
2020 (13)
2021 (12)
2024 (10)
2026 (9)
2019 (8)
2009 (7)
2025 (4)
2018 (4)
2007 (4)
2005 (2)
2006 (2)
2017 (2)
2004 (1)

UNIPROT ID/AC

O14974 (1)
O94810 (1)
P00734 (1)
P05976 (1)
P17252 (1)
P25116 (1)
P29992 (1)
P61586 (1)
P62158 (1)
P62873 (1)
P63211 (1)
Q03113 (1)
Q13464 (1)
Q14643 (1)
Q92888 (1)
Q96A00 (1)
Q9H1R3 (1)
Q9NQ66 (1)
Q9NRY4 (1)

CHEBI ID

CHEBI:16335 (14)
CHEBI:16708 (12)
CHEBI:18237 (12)
CHEBI:26271 (12)
CHEBI:28044 (12)
CHEBI:16449 (11)
CHEBI:16919 (11)
CHEBI:17368 (11)
CHEBI:17822 (11)
CHEBI:17895 (11)
CHEBI:25017 (11)
CHEBI:27897 (11)
CHEBI:15428 (10)
CHEBI:16027 (10)
CHEBI:16737 (10)
CHEBI:16811 (10)
CHEBI:17509 (10)
CHEBI:17596 (10)
CHEBI:18257 (10)
CHEBI:22653 (10)
CHEBI:25094 (10)
CHEBI:27266 (10)
CHEBI:29016 (10)
CHEBI:15996 (1)
CHEBI:16595 (1)
CHEBI:17268 (1)
CHEBI:17552 (1)
CHEBI:18035 (1)
CHEBI:18348 (1)
CHEBI:29108 (1)

Metabolite Name

Adenosine (8)
Hypoxanthine (7)
Creatinine (6)
Inosine (6)
Ornithine (6)
Uracil (6)
Adenine (5)
Biotin (5)
Choline (5)
Creatine (5)
Cytidine (5)
L-Arginine (5)
Proline (5)
Thymidine (5)
Uric acid (5)
Xanthine (5)
2-Hydroxybutyrate (4)
3-Hydroxybutyrate (4)
AMP (4)
Alanine (4)
Benzaldehyde (4)
Cholic acid (4)
Citric acid (4)
Deoxyuridine (4)
Epinephrine (4)
FAD (4)
Gluconic acid (4)
Glucosamine 6-phosphate (4)
Guanine (4)
IDP (4)

IsPrivate

False (2)

First Public Date

2023 (2)
2022 (2)
2014 (2)
2026 (1)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (198)
RNA-seq of coding RNA (28)
ChIP-seq (17)
Methylation profiling by array (12)
Comparative genomic hybridization by array (10)
Genotyping by array (7)
Unknown experiment type (5)
Cell line - High-throughput sequencing (2)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA (2)
Plant - One-color microarray (1)
High-throughput sequencing (1)
Human - One-color microarray (1)
Transcription profiling by tiling array (1)
Other (1)

Release Date

2025 (290)
2022 (273)
2021 (255)
2023 (242)
2020 (237)
2024 (228)
2015 (156)
2019 (152)
2018 (151)
2016 (135)
2017 (126)
2014 (125)
2012 (107)
2013 (98)
2010 (69)
2011 (64)
2026 (57)
2009 (44)
2008 (37)
2007 (20)
2006 (19)
2005 (14)
2004 (10)
2002 (9)
2003 (7)
2000 (5)
2001 (2)
1999 (1)
1998 (1)
1997 (1)

Lab affiliation

Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (2)
Graduate School of Pharmaceutical Sciences, Tohoku University (2)
Shiga University of Medical Science (2)
Associate Professor, Department of Biomedical Sciences,Affiliated with The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen. (1)
Department of Metabolic Medicine, Faculuty of Life Sciences, Kumamoto University, 1-1-1 Honjo, Chuoku, Kumamoto 860-8556, Japan (1)
Department of Microbial Proteomics, Institute of Microbiology, University of Greifswald, Greifswald, Germany (1)
Department of Nanobiotechnology, Vision Research Foundation, Sankara Nethralaya, 18 College Road, Chennai, Tamil Nadu, 600 006, India. (1)
Department of Neurology, Washington University School of Medicine St Louis (1)
Division of Applied Life Science, Graduate School of Agriculture (1)
Gunma University Graduate School of Medicine, Japan (1)
Helmholtz Centre for Environmental Research GmbH - UFZ Department of Molecular Systems Biology Permoserstraße 15 04318 Leipzig, Germany (1)
Helmholtz-Centrte for Environmental Research - UFZ GmbH Department of Molecular Systems Biology Permoserstr. 15 04318 Leipzig, Germany (1)
Histone Modifications Group Zentrallabor für Proteinanalytik BioMedical Center Faculty of Medicine Ludwig-Maximilians-University of Munich Großhadernerstr. 9 82152 Planegg-Martinsried GERMANY (1)
Institut Of Human Genetics, CNRS, Univ. Montpellier, UMR 9002, France (1)
Laboratory for Biomarker Development (1)
Oncode Institute, Hubrecht Institute-KNAW & University Medical Center Utrecht, Uppsalalaan 8, Utrecht, 3584 CT, The Netherlands (1)
Professor of Biochemistry and Biophysics, University of Pennsylvania School of Medicine (1)
Professor of Biomolecular Chemistry and Chemistry at University of Wisconsin-Madison (1)
Professor of Molecular Biology. Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee ,Dundee, DD1 5EH, Scotland, UK (1)
Professor of Pharmaceutical Sciences & Moulder Center for Drug Discovery Professor Lewis Katz School of Medicine Member Fox Chase Cancer Institute Director of Proteomics/Metabolomics Temple University School of Pharmacy (1)
Professor of Pharmaceutical Sciences & Moulder Center for Drug Discovery Professor Lewis Katz School of Medicine Member Fox Chase Cancer Institute Director of Proteomics/Metabolomics Temple University School of Pharmacy 3307 N Broad Street Room 552 Philadelphia, PA 19140 Tel: 215 707 9228 (1)
Section for Evolutionary Genomics, The GLOBE Institute, University of Copenhagen, Denmark (1)
The Univesity of Tokyo (1)
Tokyo University of Pharmacy and Life Sciences (1)
University of Southern Denmark, Department of Biochemistry and Molecular Biology, Campusvej 55, 5230 Odense M, Denmark (1)
University of Texas Health San Antonio (1)

Tags

xref:PubMed:15897466 (1)
xref:PubMed:36542473 (1)
xref:PubMed:37018654 (1)
xref:PubMed:27297881 (1)

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C. elegans as a model for membrane traffic.

Not available

S-EPMC4096984 | biostudies-literature

Simultaneous recording of behavioral and neural responses of free-moving nematodes C. elegans.

Not available

S-EPMC8669343 | biostudies-literature

Electrophilic aromatic substitution using fluorinated isoxazolines at the C5 position <i>via</i> C-F bond cleavage.

Not available

S-EPMC11647199 | biostudies-literature

Impaired LPS Signaling in Macrophages Overexpressing the P2X7 C-Terminal Domain or Anti-P2X7 C-Terminal Domain Intrabody.

Not available

S-EPMC11818346 | biostudies-literature

Guanylate cyclase C as a target for prevention, detection, and therapy in colorectal cancer.

Not available

S-EPMC5742255 | biostudies-literature

Functional Role of the C-Terminal Amphipathic Helix 8 of Olfactory Receptors and Other G Protein-Coupled Receptors.

Not available

S-EPMC5133925 | biostudies-literature

Up-regulated aldo-ketoreductase1B10 in chronic hepatitis C: Association with serum alpha-fetoprotein and hepatocellular carcinoma

We attempted to identify a specific gene expression signature by performing microarray analysis on the livers of patients with chronic hepatitis C and AFP elevation. Distinct hepatic gene expression patterns were demonstrated between patients with elevated AFP (≥10ng/mL) and normal AFP (<10ng/mL). A...

ORGANISM(S): Homo sapiens

2014-09-15 | E-GEOD-32221 | biostudies-arrayexpress

The Colletotrichum dracaenophilum, C. magnum and C. orchidearum species complexes.

Not available

S-EPMC6030544 | biostudies-literature

Extended therapy duration for therapy-refractory hepatitis C patients with genotype 2.

Not available

S-EPMC3769916 | biostudies-literature

C/EBPa Regulates Protease/anti-protease Balance and Mediates Bronchiolar Cell Recovery After Injury

In the present study, we hypothesized that C/EBPa (CCAAT/enhancer-binding protein alpha) plays a role in cell regeneration in response to bronchiolar epithelial cell injury. C/EBPa mediated ciliated cell regeneration after naphthalene bronchiolar epithelial cell injury in vivo. Furthermore, we demon...

ORGANISM(S): Mus musculus

2012-05-12 | E-GEOD-29285 | biostudies-arrayexpress

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