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TranscriptomicsMicrocolony formation by the opportunistic pathogen Pseudomonas aeruginosa requires pyruvate and pyruvate fermentation.
A hallmark of the biofilm architecture is the presence of microcolonies. However, little is known about the underlying mechanisms governing microcolony formation. In the human pathogen Pseudomonas aeruginosa, microcolony formation is dependent on the two-component regulator MifR, with mifR mutant bi...
ORGANISM(S): Pseudomonas aeruginosa 
2012-04-30 | E-GEOD-35286 | biostudies-arrayexpress
TranscriptomicsPseudomonas aeruginosa two-component regulator BfmR controls bacteriophage lysis and DNA release during biofilm development through PhdA
Biofilms are surface-adhered bacterial communities encased in an extracellular matrix composed of polysaccharides, proteins, and extracelluar (e)DNA, with eDNA being required for the formation and integrity of biofilms. Here we demonstrate that the spatial and temporal release of eDNA is regulated b...
ORGANISM(S): Pseudomonas aeruginosa 
2011-06-01 | E-GEOD-28953 | biostudies-arrayexpress
UnknownD-xylose degradation pathway in the halophilic archaeon Haloferax volcanii.
Not available
S-EPMC2785657 | biostudies-literature
UnknownRPA(D) and HRPA(D): Calculating NMR Spin-Spin Coupling Constants in Free Amino Acid Residues.
Not available
S-EPMC11876946 | biostudies-literature
OtherSupplemental metabolomics data files for "Hierarchical control of microbial community assembly"
This metabolomics data supplements "Hierarchical control of microbial community assembly" Sammy Pontrelli, Rachel Szabo, Shaul Pollak, Julia Schwartzman, Daniela Ledezma-Tejeida, Otto X. Cordero, Uwe Sauer Datasets include FIA-QTOF-MS and LC-MS data of metabolite secretion and consumption data of ...
ORGANISM(S): Vibrio Sp. G2r10 Alteromonas Sp. A3r04 Citricella Sp. C3m06 Vibrio Sp. Vnigr-6d03 (ncbitaxon:2058088) Vibrio Sp. 1a01 (ncbitaxon:314742) Silicibacter Sp. A3r06 F__pseudoalteromonadaceae I2r16 Reinekea Sp. G2m07 Marinobacter Sp. F3r11 Phaeobacter Sp. B3m02 Amphritea Sp.c1r06 Psychromonas Sp. Psych-6c06 (ncbitaxon:2058089) Marinobacter Sp. F3r08 Paracoccus Kamogawaensis C2r09 Marinobacter Sp. D2m19 Vibrio Sp. C3r12 Colwellia Psychrerythraea C2m11 
2021-05-18 | MSV000087455 | MassIVE
UnknownCFD data of unsteady cavitation around a hydrofoil, based on an extended Schnerr-Sauer model coupled with a nucleation model.
Not available
S-EPMC6718806 | biostudies-literature
MetabolomicsGlycolysis/gluconeogenesis specialization in microbes is driven by biochemical constraints of flux sensing
Central carbon metabolism is highly conserved across microbial species, but can catalyze very different pathways depending on the organism and their ecological niche. Here, we study the dynamic reorganization of central metabolism after switches between the two major opposing pathway configurations ...
2022-01-11 | MTBLS3887 | MetaboLights
UnknownDifferent nontarget-site mechanisms underlie resistance to dicamba and 2,4-D in an Amaranthus tuberculatus population.
Not available
S-EPMC12159393 | biostudies-literature
MetabolomicsGNPS Supplemental metabolomics data files for
This metabolomics data supplements "Hierarchical control of microbial community assembly" Sammy Pontrelli, Rachel Szabo, Shaul Pollak, Julia Schwartzman, Daniela Ledezma-Tejeida, Otto X. Cordero, Uwe Sauer Datasets include FIA-QTOF-MS and LC-MS data of metabolite secretion and consumption data of ...
ORGANISM(S): Alteromonas Sp. A3r04 Citricella Sp. C3m06 Vibrio Sp. G2r10 Vibrio Sp. 1a01 (ncbitaxon:314742) Vibrio Sp. Vnigr-6d03 (ncbitaxon:2058088) Silicibacter Sp. A3r06 Reinekea Sp. G2m07 Marinobacter Sp. F3r11 Phaeobacter Sp. B3m02 F__pseudoalteromonadaceae I2r16 Amphritea Sp.c1r06 Psychromonas Sp. Psych-6c06 (ncbitaxon:2058089) Marinobacter Sp. F3r08 Paracoccus Kamogawaensis C2r09 Marinobacter Sp. D2m19 Vibrio Sp. C3r12 Colwellia Psychrerythraea C2m11 
2021-05-18 | MSV000087455 | GNPS
UnknownSP-D Serum Levels Reveal Distinct Epithelial Damage in Direct Human ARDS.
Not available
S-EPMC7917979 | biostudies-literature
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