Sauer M M - OmicsDI

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Unknown (1011)
Proteomics (46)
Transcriptomics (44)
Metabolomics (20)
Genomics (11)
Models (4)

Organisms

Homo sapiens (49)
Mus musculus (8)
Saccharomyces cerevisiae (6)
Drosophila melanogaster (5)
Pseudomonas aeruginosa (4)
Bacillus subtilis subsp. subtilis str. 168 (3)
Arabidopsis thaliana (3)
Rattus norvegicus (3)
Pseudomonas aeruginosa PAO1 (2)
Escherichia coli (2)
Komagataella pastoris DSMZ 70382 (2)
Amblyomma americanum (1)
Rhodopseudomonas palustris CGA009 (1)
Dermacentor andersoni (1)
Schizosaccharomyces pombe (1)
Bacillus subtilis (1)
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Bacteria (1)
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Organisms

Pseudomonas aeruginosa (2)

Repository

biostudies-arrayexpress (50)
pride (41)
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Tissue

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Disease

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Technology Type

Mass Spectrometry (41)
Mass spectrometry (18)
Shotgun proteomics (12)
Bottom-up proteomics (11)
SWATH MS (8)
Data-dependent acquisition (5)
Data-independent acquisition (5)
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Affinity purification coupled with mass spectrometry proteomics (2)
ILLUMINA, Illumina HiSeq 2000 (1)
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HDMSE (1)
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SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (7)
Liquid Chromatography MS - negative - reverse phase (5)
Flow injection analysis MS - negative (4)
Illumina HiSeq 2000 (3)
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NextSeq 550 (2)
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Gas Chromatography MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - - hilic (1)
Liquid Chromatography MS - HILIC (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS – HILIC (1)
SYNAPT G2 HDMS (Waters) (1)
TSQ Quantum Ultra (Thermo Scientific) (1)

Publication Date

2023 (13)
2025 (11)
2022 (11)
2015 (10)
2024 (9)
2026 (8)
2016 (6)
2012 (6)
2011 (6)
2010 (6)
2021 (5)
2019 (5)
2013 (5)
2008 (5)
2014 (4)
2017 (3)
2020 (3)
2005 (2)
2004 (1)

UNIPROT ID/AC

A5YWB0 (1)
O13525 (1)
P00044 (1)
P00045 (1)
P00127 (1)
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P00163 (1)
P00175 (1)
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P00830 (1)

CHEBI ID

CHEBI:15428 (8)
CHEBI:10723 (1)
CHEBI:1109 (1)
CHEBI:11851 (1)
CHEBI:12071 (1)
CHEBI:12936 (1)
CHEBI:12952 (1)
CHEBI:13086 (1)
CHEBI:13705 (1)
CHEBI:15343 (1)
CHEBI:15345 (1)
CHEBI:15346 (1)
CHEBI:15351 (1)
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CHEBI:15361 (1)
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CHEBI:15379 (1)
CHEBI:15380 (1)
CHEBI:15414 (1)
CHEBI:15422 (1)
CHEBI:15430 (1)
CHEBI:15435 (1)
CHEBI:15437 (1)
CHEBI:15439 (1)
CHEBI:15440 (1)
CHEBI:15441 (1)
CHEBI:15467 (1)
CHEBI:15468 (1)
CHEBI:15471 (1)
CHEBI:15491 (1)

Metabolite Name

Adenosine (6)
Citric acid (5)
Hypoxanthine (5)
Nicotinic acid (5)
Riboflavin (5)
Adenine (4)
Alanine (4)
Betaine (4)
Cytosine (4)
Guanine (4)
Histamine (4)
Inosine (4)
L-Arginine (4)
L-Histidine (4)
L-Methionine (4)
L-Proline (4)
L-Tryptophan (4)
Phenylalanine (4)
Uracil (4)
Xanthine (4)
1-Methylnicotinamide (3)
3-Methyl-2-oxovaleric acid (3)
4-Guanidinobutyric acid (3)
5-Methyluridine (3)
Ascorbic acid (3)
Caffeine (3)
Choline (3)
Cytidine (3)
D-Glucose (3)
D-Sorbitol (3)

First Public Date

2014 (2)

Modelling Approach

Constraint-based model (2)

Lab affiliation

Section for Translational Surgical Oncology and Biobanking, Department of Surgery, University of Lübeck and University Hospital Schleswig-Holstein, Campus Lübeck, Germany (5)
Experimental Surgery, Department of Surgery, Charité - Universitätsmedizin Berlin (2)
University of Lübeck Section for Translational Surgical Oncology & Biobanking Department of Surgery Ratzeburger Allee 160, BMF 23558 Lübeck, Germany (2)
1) Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland 2) Faculty of Science, University of Zurich, Zurich, Switzerland (1)
Core Unit Proteomics, Berlin Institute of Health at Charite - Universitaetsmedizin Berlin and Max-Delbrueck-Center for Molecular Medicine, Berlin, Germany (1)
Departamento de Bioquímica y Biología Molecular B e Inmunología. Facultad de Química. Universidad de Murcia. Campus de Excelencia Mare Nostrum (1)
Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, UK (1)
Department of General, Visceral and Transplant Surgery, University Hospital Muenster, 48149 Muenster, Germany (1)
Department of Internal Medicine V, Heidelberg University Hospital, 69120 Heidelberg, Germany (1)
Department of Surgery, Charité Universitätsmedizin Berlin (1)
Director Institute of Molecular Systems Medicine Director Center for Functional Proteomics Goethe University Frankfurt (1)
ETH Zurich (1)
Hopp Children`s Cancer Center Heidelberg (KiTZ) National Center for Tumor Diseases (NCT), NCT Heidelberg, a partnership between DKFZ and Heidelberg University Hospital, Germany Division of Translational Pediatric Sarcoma Research, German Cancer Research Center (DKFZ), German Cancer Consortium (DKTK), Heidelberg, Germany (1)
Insititute of molecular systems biologie, ETH Zürich, Switzerland (1)
Institute of Biochemistry II, Faculty of Medicine, Goethe University, Frankfurt am Main, Germany Frankfurt Cancer Institute, Frankfurt am Main, Germany Cardio-Pulmonary Institute, Frankfurt am Main, Germany (1)
Institute of Molecular Systems Biologie, ETH Zürich, Switzerland (1)
Institute of Molecular Systems Biology, ETH Zürich, Switzerland (1)
MPIMG (1)
Marine Chemistry and Geochemistry Woods Hole Oceanographic Institute (1)
Proteomics and Cancer Cell Signaling, DKFZ Heidelberg (lab head) (1)
Quantitative Proteomics and Metabolomics Berlin Institute for Medical Systems Biology (BIMSB) Max-Delbrück-Centrum für Molekulare Medizin in der Helmholtz-Gemeinschaft Hannoversche Straße 28 10115 Berlin (1)
Sant Pau Memory Unit, Department of Neurology, Hospital de la Santa Creu i Sant Pau, Biomedical Research Institute Sant Pau (IIB Sant Pau), Universitat Autònoma de Barcelona, Barcelona, Spain (1)
Sapienza University of Rome (1)
School of Pharmacy and Department of Chemistry, University of WI-Madison, Madison, WI, United States (1)
Section for Translational Surgical Oncology and Biobanking, Department of Surgery, University of Luebeck & and University Hospital Clinic Schleswig-Holstein (1)
Section for Translational Surgical Oncology and Biobanking, Department of Surgery, University of Lübeck and University Hospital Schleswig-Holstein, Campus Lübeck (1)
Section for Translational Surgical Oncology and Biobanking, Department of Surgery, University of Lübeck and University Hospital Schleswig-Holstein, Campus Lübeck, Ratzeburger Allee 160, 23538 Lübeck Germany (1)
Technical University of Munich, School of Medicine and Health, Department of Otolaryngology, Head and Neck Surgery, TUM University Hospital, Munich, Germany (1)
University Hospital Schleswig-Holstein, Campus Lübeck, Department of Surgery (1)
University of Gothenburg (1)

IsPrivate

False (4)

Model Flag

Non Kinetic (3)

Submitter Keywords

FROG (1)

Classification

bacteria (2)

Study type

Transcription profiling by array (25)
RNA-seq of coding RNA (9)
ChIP-seq (6)
RNA-seq of coding RNA from single cells (3)
Unknown experiment type (2)
ChIP-chip by array (2)
Comparative genomic hybridization by array (1)
Single nucleus RNA sequencing (1)
Methylation profiling by array (1)

Release Date

2021 (114)
2022 (107)
2025 (105)
2023 (103)
2020 (101)
2024 (88)
2019 (74)
2017 (58)
2018 (50)
2015 (45)
2016 (42)
2014 (34)
2013 (27)
2011 (24)
2010 (18)
2012 (15)
2008 (14)
2026 (13)
2009 (10)
2004 (5)
2007 (4)
2006 (4)
2005 (3)
2003 (3)

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Microcolony formation by the opportunistic pathogen Pseudomonas aeruginosa requires pyruvate and pyruvate fermentation.

A hallmark of the biofilm architecture is the presence of microcolonies. However, little is known about the underlying mechanisms governing microcolony formation. In the human pathogen Pseudomonas aeruginosa, microcolony formation is dependent on the two-component regulator MifR, with mifR mutant bi...

ORGANISM(S): Pseudomonas aeruginosa

2012-04-30 | E-GEOD-35286 | biostudies-arrayexpress

Pseudomonas aeruginosa two-component regulator BfmR controls bacteriophage lysis and DNA release during biofilm development through PhdA

Biofilms are surface-adhered bacterial communities encased in an extracellular matrix composed of polysaccharides, proteins, and extracelluar (e)DNA, with eDNA being required for the formation and integrity of biofilms. Here we demonstrate that the spatial and temporal release of eDNA is regulated b...

ORGANISM(S): Pseudomonas aeruginosa

2011-06-01 | E-GEOD-28953 | biostudies-arrayexpress

Dual RNA-seq of M. tuberculosis H37Rv infecting macrophage-like THP-1 cells during 48h

Transcriptional changes during early infection of macrophage-like THP-1 cell line with pathogenic bacterium Mycobacterium tuberculosis. RNAseq samples were taken at 0h (THP-1 cells growing in the RPMI medium), and after 4h, 24h and 48h post infection. Bacterial enrichment was performed to increase t...

ORGANISM(S): Homo sapiens

2017-08-01 | E-MTAB-5287 | biostudies-arrayexpress

Structural diversity in the atomic resolution 3D fingerprint of the titin M-band segment.

Not available

S-EPMC6922384 | biostudies-literature

Glycolysis/gluconeogenesis specialization in microbes is driven by biochemical constraints of flux sensing

Central carbon metabolism is highly conserved across microbial species, but can catalyze very different pathways depending on the organism and their ecological niche. Here, we study the dynamic reorganization of central metabolism after switches between the two major opposing pathway configurations ...

2022-01-11 | MTBLS3887 | MetaboLights

Transcription profiling of P. aeruginosa glutamate mediated biofilm dispersion

Effect of glutamate mediated dispersion of Pseudomonas aeruginosa PAO1 from a biofilm.

ORGANISM(S): Pseudomonas aeruginosa

2004-07-10 | E-MEXP-87 | biostudies-arrayexpress

Dapagliflozin's Association With Cardiorenal Outcomes and Apolipoprotein M Levels in HFrEF Patients: Insights From DEFINE-HF.

Not available

S-EPMC12277613 | biostudies-literature

Serine and Lipid Metabolism in Macular Disease and Peripheral Neuropathy.

Not available

S-EPMC7685488 | biostudies-literature

Pollen-mediated gene flow from glyphosate-resistant common waterhemp (Amaranthus rudis Sauer): consequences for the dispersal of resistance genes.