Scaffolding functions

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Metabolite Name

ÎÛ-CEHC (1)
(2S)-4-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl-(carboxylatomethyl)sulfonio]-2-azaniumylbutanoate (1)
(2S)-2-azaniumyl-3-(7-chloro-1H-indol-3-yl)propanoate (1)
2-hydroxy-1-[(3R,10S,11S,13S,17R)-3,11,17-trihydroxy-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,14,15,16-tetradecahydrocyclopenta[a]phenanthren-17-yl]ethanone (1)
[4,5,6-trihydroxy-2-(hydroxymethyl)oxan-3-yl] 2-(1H-indol-3-yl)acetate (1)
3-(1H-imidazol-5-ylmethyl)-6-(1H-indol-3-ylmethyl)piperazine-2,5-dione (1)
[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] benzoate (1)
2-amino-9-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-3H-purin-6-one (1)
Val Glu Phe Asp (1)
Trioxilin B3;(5Z,8Z,14Z)-(11R,12R)-10,11,12-Trihydroxyeicosa-5,8,14-trienoic acid;(5Z,8Z,14Z)-(11R,12R)-10,11,12-Trihydroxyicosa-5,8,14-trienoic acid (1)
Toxicarol;alpha-Toxicarol (1)
Thr Lys Asn Glu (1)
Phe Asn Thr Lys (1)
N-hexadecyl hydroxyproline (1)
N-Acetyl-L-2-amino-6-oxopimelate;L-2-Acetamido-6-oxoheptanedioate;L-2-Acetamido-6-oxopimelate (1)
N-Acetyl-D-fucosamine;2-Acetamido-2,6-dideoxy-D-galactose (1)
Melibiitol;6-O-alpha-D-Galactosyl-D-glucitol (1)
Lys Ile Asn Glu (1)
Lys Asn Gln Glu (1)
L-Pyrrolysine;Pyrrolysine (1)
Leu Pro Val Leu Glu (1)
Ile Ile Glu Glu Val (1)
Ile Asn Val Asp (1)
His Phe Ile Lys (1)
Dimethylallyltryptophan;4-Dimethylallyltryptophan (1)
Asn Ser Leu Arg (1)
Ala Lys Asn Glu (1)
9,10-12,13-Diepoxyoctadecanoate;9,10-12,13-Diepoxyoctadecanoic acid (1)
6'''-Deamino-6'''-oxoneomycin C;6'''-Oxoneomycin C;6'''-Deamino-6'''-dehydro-6'''-oxoneomycin C (1)
4-DHEA enanthate (1)

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Modelling Approach

Other (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (3)
Department of Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, Geneva, CH-1211 Switzerland (2)
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1Department of Pharmacology, School of Medicine, University of California, San Diego, La Jolla, CA 92093 (1)
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CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom. (1)
Clem Jones Centre of Aging Dementia Research, Queensland Brain Institute, University of Queensland (1)
Department of Biochemistry Department of Oncology Robarts Research Institute Schulich School of Medicine & Dentistry Western University (1)
Department of Biological Sciences, Korea Advanced Institute for Science and Technology (KAIST), Korea (1)
Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), PO Box 8905, N-7491, Trondheim, Norway Phone: +47 72573075, Fax: +47 72576400 (1)
Dept of Biochemistry and Biophysics, Penn Medicine (1)
Drug Discovery Biology Theme Monash Institute of Pharmaceutical Sciences Monash University 399 Royal Parade (Mail address: 381 Royal Parade) Parkville VIC 3052 Australia (1)
Faculty of Biology Technion- Israel Institute of Technology Technion City, Haifa, Israel (1)
Fred Hutch Cancer Center, Human Biology Division (1)
Genetics Section Molecular and Clinical Sciences St. George's, University of London Jenner 2.142B, Cranmer Terrace London SW17 0RE (1)
Genome Research (1)
Imperial College London (1)
Indiana University School of Medicine (1)
Institut de recherches cliniques de Montréal, Center for Genetic and Neurological Diseases,Montréal, QC, Canada Département de biochimie et médecine moléculaire, Université de Montréal, Montréal, QC, Canada Division of Experimental Medicine, McGill University, Montreal, QC, Canada (1)
Institute of Chemistry, Academia Sinica, Taiwan (1)
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Institute of Pharmacology and Toxicology Faculty of Science (MNF) University of Zurich (UZH) (1)
Mass Spectrometry & Proteomics Core Facility (MSPCF) Institute for Research in Biomedicine (IRB Barcelona) Barcelona Institute of Science and Technology (BIST) C/ Baldiri Reixac, 10-12 08028 Barcelona - Spain. (1)
Mass Spectrometry Laboratory, Faculty of Biotechnology, University of Wroclaw (1)
Massachusetts Institute of Technology (1)
Medical Research Council (MRC) Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, United Kingdom (1)
Shandong Provincial Hospital Affiliated to Shandong First Medical University (1)
The Netherlands Cancer Institute Proteomics Facility (1)
UCSF (1)

IsPrivate

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Submitter Keywords

FAIR-AIML (1)
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Classification

bacteria (1)

Modification

Not available (1)

Study type

Transcription profiling by array (3)
ChIP-seq (1)

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2005 (5)
1999 (3)
2004 (2)
2003 (2)

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ATAD3A has a scaffolding role regulating mitochondria inner membrane structure and protein assembly

The ATPase Family AAA Domain Containing 3A (ATAD3A), is a mitochondrial inner membrane protein conserved in metazoans. ATAD3A has been associated with several mitochondrial functions, including nucleoid organization, cholesterol metabolism, and mitochondrial translation. To address its primary ro...

2022-01-14 | MTBLS3786 | MetaboLights

ARRDC3 tyrosine phosphorylation functions as a switch to control c-Src versus WWP2 interactions and distinct scaffolding functions

Mammalian -arrestins are members of the same arrestin family as the ubiquitously expressed and extensively studied -arrestins. Arrestins share common structural elements including the conserved N- and C-arrestin-fold domains, polar core, finger loop, and C-terminal tail, all of which mediate protei...

ORGANISM(S): Homo sapiens (Human)

2025-07-14 | PXD060782 | Pride

Wang2022 - Scaffolding protein functional sites using deep learning

Deep learning approaches for scaffolding such functional sites without needing to prespecify the fold or secondary structure of the scaffold. The first approach, “constrained hallucination,” optimizes sequences such that their predicted structures contain the desired functional site. The second appr...

2023-05-10 | BIOMD0000001071 | BioModels

Machine Learning Model FAIR-AIML

ARRDC3 tyrosine phosphorylation functions as a switch to control c-Src versus WWP2 interactions and distinct scaffolding functions.

Not available

S-EPMC12213294 | biostudies-literature

Osmosensing and scaffolding functions of the oligomeric four-transmembrane domain osmosensor Sho1.

Not available

S-EPMC4411306 | biostudies-literature

Vav2 lacks Ca2+ entry-promoting scaffolding functions unique to Vav1 and inhibits T cell activation via Cdc42.

Not available

S-EPMC7075049 | biostudies-literature

Critical functions and key interactions mediated by the RNase E scaffolding domain in Pseudomonas aeruginosa