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GenomicsTemperature-dependent alternative splicing of FLM controls flowering in Arabidopsis thaliana
How plants control the transition to flowering in response to ambient temperature is only beginning to be understood. In Arabidopsis thaliana, the MADS-box transcription factor genes FLOWERING LOCUS M (FLM) and SHORT VEGETATIVE PHASE (SVP) have key roles in this process. FLM is subject to temperatu...
ORGANISM(S): Arabidopsis thaliana 
2013-09-19 | E-GEOD-48082 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of 80 Arabidopsis tissues/cells (AtGenExpress data) see also E-TABM-17 for a re-annotated set with CEL files for download
The activity of genes and their encoded products can be regulated in several ways, but transcription is the primary level, since all other modes of regulation (RNA splicing, RNA and protein stability, etc.) are dependent on a gene being transcribed in the first place. The importance of transcription...
ORGANISM(S): Arabidopsis thaliana 
2022-11-20 | E-AFMX-9 | biostudies-arrayexpress
TranscriptomicsSchmid_flowering_mutants_2013
Synchronized induction of flowering in Arabidopsis thaliana wild type (Col-0) and flowering time mutants (soc1, agl24, fd) by shifting from short day (8 hr light, 16 hr dark; 23C; 65% rel humidity) to long day (16 hr light, 8 hr dark; 23C; 65% rel humidity) for 0, 3, 5, and 7 days. Biotinylated prob...
ORGANISM(S): Arabidopsis thaliana 
2013-11-01 | E-MEXP-4001 | biostudies-arrayexpress
MetabolomicsAccumulation of the coumarin scopolin under abiotic stress conditions is mediated by the Arabidopsis thaliana THO/TREX complex
Secondary metabolites are involved in the plant stress response. Among these are scopolin and its active form scopoletin, which are coumarin derivatives associated with reactive oxygen species scavenging and pathogen defence. Here we show that in Arabidopsis thaliana, scopolin accumulation can be in...
2018-02-05 | MTBLS389 | MetaboLights
TranscriptomicsTranscription profiling of Arabidopsis micro-dissected apical tissue harvested 0, 3, 5, and 7 days after the shift to LD from SD
Floral transition and flower development are regulated by numerous environmental and endogenous signals, which are integrated at a relatively small number of floral integrators, such as FLOWERING LOCUS T (FT) and SUPPRESSOR OF CONSTANS OVEREXPRESSION 1 (SOC1). Of the environmental factors, photoperi...
ORGANISM(S): Arabidopsis thaliana 
2022-11-20 | E-AFMX-8 | biostudies-arrayexpress
ModelsBegitt2014 - STAT1 cooperative DNA binding - double GAS polymer model
Begitt2014 - STAT1 cooperative DNA binding - double GAS polymer model The importance of STAT1-cooperative DNA binding in type 1 and type 2 interferon signalling has been studies using experimental and modelling approaches. The authors have developed two ODE models to describe STAT1...
2024-09-02 | BIOMD0000000501 | BioModels
ModelsBegitt2014 - STAT1 cooperative DNA binding - single GAS polymer model
Begitt2014 - STAT1 cooperative DNA binding - single GAS polymer model The importance of STAT1-cooperative DNA binding in type 1 and type 2 interferon signalling has been studies using experimental and modelling approaches. The authors have developed two ODE models to describe STAT1...
2024-09-02 | BIOMD0000000500 | BioModels
Manuscript Accepted 
TranscriptomicsTranscription profiling of Arabidopsis apices from control and smz-D flc-3 knock-out plants after photoperiod induction
Response of control (flc-3) and dominant late flowering mutant (smz-D flc-3) to inductive photoperiod (tissue: apices)
ORGANISM(S): Arabidopsis thaliana 
2009-06-05 | E-MEXP-2041 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of Arabidopsis seedlings to identify SMZ targets
Identification of SMZ targets by ChIP-Chip
ORGANISM(S): Arabidopsis thaliana 
2009-06-05 | E-MEXP-2068 | biostudies-arrayexpress
TranscriptomicsChIP-chip by array of Arabidopsis thaliana rosette leaves by AB290 (AbCam).
Identification of AP2 targets by ChIP-Chip
ORGANISM(S): Arabidopsis thaliana 
2010-07-01 | E-MEXP-2653 | biostudies-arrayexpress
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