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Unknown (86)
Metabolomics (19)
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Dinoroseobacter shibae (1)
Dinoroseobacter shibae DFL 12 = DSM 16493 (1)

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MetaboLights (19)
pride (2)
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Mass spectrometry (18)
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Instrument Platform

GC-MS (6)
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Gas Chromatography MS - positive (3)
Gas Chromatography MS - (2)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (negative mode) (1)
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Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2015 (7)
2017 (3)
2021 (3)
2014 (2)
2026 (2)
2020 (2)
2019 (2)
2005 (1)
2024 (1)
2018 (1)

CHEBI ID

CHEBI:15428 (18)
CHEBI:30769 (18)
CHEBI:17754 (16)
CHEBI:18012 (16)
CHEBI:17497 (15)
CHEBI:30746 (15)
CHEBI:15756 (15)
CHEBI:26078 (15)
CHEBI:15741 (15)
CHEBI:24898 (14)
CHEBI:28842 (14)
CHEBI:16857 (14)
CHEBI:17268 (14)
CHEBI:15963 (13)
CHEBI:16000 (13)
CHEBI:6650 (13)
CHEBI:16414 (13)
CHEBI:78320 (12)
CHEBI:16634 (12)
CHEBI:4167 (12)
CHEBI:25017 (12)
CHEBI:16865 (12)
CHEBI:17295 (12)
CHEBI:17568 (12)
CHEBI:30763 (11)
CHEBI:17148 (11)
CHEBI:17992 (11)
CHEBI:15940 (11)
CHEBI:30915 (11)
CHEBI:16199 (11)

Metabolite Name

Myo-inositol (10)
Citric acid (10)
Sucrose (9)
L-threonine (9)
Succinic acid (9)
Glycolic acid (9)
Fumaric acid (9)
L-valine (9)
Benzoic acid (9)
D-galactose (8)
L-proline (8)
Phosphoric acid (8)
Raffinose (8)
L-glutamic acid (8)
Glycine (8)
Glycerol (8)
Galactinol (7)
D-galactonic acid (7)
L-threonic acid (7)
D-fructose (7)
Stearic acid (7)
Lactic acid (7)
Palmitic acid (7)
2-hydroxypyridine (7)
Putrescine (7)
D-sorbitol (7)
D-glucopyranose (7)
Ethanolamine (7)
4-hydroxybenzoic acid (7)
3-hydroxypyridine (7)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Study type

RNA-seq of coding RNA (1)

Release Date

2021 (11)
2017 (9)
2022 (7)
2014 (6)
2020 (6)
2010 (6)
2025 (5)
2019 (5)
2012 (5)
2023 (4)
2018 (4)
2024 (3)
2016 (3)
2013 (3)
2011 (2)
2005 (2)
2003 (2)
2015 (1)
2007 (1)
2006 (1)
2004 (1)

Lab affiliation

General and molecular microbiology, Institute for chemistry and biology of the marine environment (ICBM), Carl von Ossietzky University of Oldenburg, Oldenburg, Germany (1)
University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (1)

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Crystallization and preliminary crystallographic analysis of a family 43 beta-D-xylosidase from Geobacillus stearothermophilus T-6.

Not available

S-EPMC1978154 | biostudies-literature

Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms

Dynamic environmental factors such as light, nutrients, salt, and temperature continuously affect chlorophototrophic microbial mats, requiring adaptive and acclimative responses to stabilize composition and function. Quantitative metabolomics analysis can provide insights into metabolite dynamics fo...

2024-02-23 | MTBLS187 | MetaboLights

Crystal structure of the nitrogenase-like dark operative protochlorophyllide oxidoreductase catalytic complex (ChlN/ChlB)2.

Not available

S-EPMC2930732 | biostudies-literature

Gene regulatory and metabolic adaptation processes of Dinoroseobacter shibae DFL12T during oxygen depletion.

Not available

S-EPMC4036333 | biostudies-literature

Metabolic model of Sulfolobus solfataricus

2017-04-24 | 231 | FAIRDOMHub

Neuronal selenoprotein expression is required for interneuron development and prevents seizures and neurodegeneration.

Not available

S-EPMC2830140 | biostudies-literature

Selenoprotein P as Biomarker of Selenium Status in Clinical Trials with Therapeutic Dosages of Selenite.

Not available

S-EPMC7230801 | biostudies-literature

Rex2013 - Genome scale metabolic model of D.shibae (iDsh827)

Rex2013 - Genome scale metabolic model of D.shibae (iDsh827) The aerobic anoxygenic phototroph Dinoroseobacter shibae DFL12T is a representative of an important group of marine bacteria called the Roseobacter clade. To gain insight into the versatile metabolism of this clade, t...

2005-01-01 | MODEL1308180000 | BioModels

Selenium in sepsis--substitution, supplementation or pro-oxidative bolus?

Not available

S-EPMC4095569 | biostudies-literature

Treatment with recombinant human bone morphogenetic protein 7 leads to a transient induction of neutralizing autoantibodies in a subset of patients.

Not available

S-EPMC5007422 | biostudies-literature