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TranscriptomicsncRNA termination in Saccharomyces cerevisiae
Nuclear depletion of the essential transcription termination factor Nrd1 in Saccharomyces cerevisiae was studied using a combination of RNA-Seq, ChIP-Seq of Pol II and PAR-CLIP of Nrd1. The drug rapamycin induces the formation of a ternary complex between a protein of interest, the drug and the smal...
ORGANISM(S): Saccharomyces cerevisiae 
2013-11-14 | E-MTAB-1766 | biostudies-arrayexpress
UnknownBiosynthesis of Violacein, Structure and Function of l-Tryptophan Oxidase VioA from Chromobacterium violaceum.
Not available
S-EPMC5025692 | biostudies-literature
UnknownChanges in Trophic Groups of Protists With Conversion of Rainforest Into Rubber and Oil Palm Plantations.
Not available
S-EPMC6380168 | biostudies-literature
ProteomicsBile effect on the profile of produced extracellular vesicles of Lactiplantibacillus plantarum.
Bacterial extracellular vesicles (EVs), lipid bilayered particles ranging from 20 to 400 nm, are secreted by bacteria and carry cargo including proteins, lipids, and nucleic acids. EVs composition varies between Gram-positive and Gram-negative bacteria, and they contain pathogen recognition receptor...
ORGANISM(S): Lactobacillus plantarum Bacteria 
2026-09-07 | PXD060959 | Pride
Stress Proteomics Bile salt hydrolase Bacteria 
TranscriptomicsGene expression of resting memory, resting naive and in vitro activated memory CD8+CD127+ T cells from spleen and bone marrow (BM)
To understand differences between resting and activated memory CD8+ T cells, we compared the global gene expression of ex vivo isolated naive and spleen and BM memory cells to in vitro activated spleen and BM memory cells. Single cell suspension from the spleen and bones of aged C57BL/6 mice were pr...
ORGANISM(S): Mus musculus 
2015-02-05 | E-GEOD-62691 | biostudies-arrayexpress
TranscriptomicsThe UBC-40 Urothelial Bladder Cancer Cell Line Index [copy number variation]
This is a comprehensive genomic characterization of 40 urothelial bladder carcinoma (UBC) cell lines including information on origin, mutation status of genes implicated in bladder cancer (FGFR3, PIK3CA, TP53, and RAS), copy number alterations assessed using high density SNP arrays, uniparental diso...
ORGANISM(S): Homo sapiens 
2015-06-19 | E-GEOD-64572 | biostudies-arrayexpress
TranscriptomicsThe UBC-40 Urothelial Bladder Cancer Cell Line Index [gene expression]
This is a comprehensive genomic characterization of 40 urothelial bladder carcinoma (UBC) cell lines including information on origin, mutation status of genes implicated in bladder cancer (FGFR3, PIK3CA, TP53, and RAS), copy number alterations assessed using high density SNP arrays, uniparental diso...
ORGANISM(S): Homo sapiens 
2015-06-19 | E-GEOD-64279 | biostudies-arrayexpress
UnknownMulti-modal image analysis for large-scale cancer tissue studies within IMMUcan.
Not available
S-EPMC12539258 | biostudies-literature
TranscriptomicsDynamic transcriptome analysis reveals mRNA synthesis and decay in yeast
To obtain rates of mRNA synthesis and decay in yeast, we established dynamic transcriptome analysis (DTA). DTA combines non-perturbing metabolic RNA labeling with dynamic kinetic modeling. DTA was used to monitor the cellular response to osmotic stress in comparison to the wild type. Genomic occupa...
ORGANISM(S): Saccharomyces cerevisiae 
2011-11-01 | E-MTAB-439 | biostudies-arrayexpress
TranscriptomicsRNA sequencing of tumor associated macrophages and T cells in clear cell renal cell carcinoma
Tumor associated macrophages and T cells were characterized in a cohort of 73 ccRCC and 5 healthy donors using mass cytometry. Macrophage and T cell subsets of interest were identified and sorted directly from samples known to contain a high frequency of these subsets. CD8+ PD-1- T cells (n=6), exha...
ORGANISM(S): Homo sapiens 
2017-05-04 | E-MTAB-5640 | biostudies-arrayexpress
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