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Genomics[E-TABM-722] Transcription factor binding evolution in five vertebrates
Five-vertebrate ChIP-seq reveals the evolutionary dynamics of trancription factor binding. The SRF files for this experiment can be found in the European Read Archive with study accession number ERP000054. ArrayExpress Submission Date: Apr 07 2010 ArrayExpress Release Date: Apr 08 2010 Publication A...
ORGANISM(S): Canis lupus familiaris Monodelphis domestica Homo sapiens Mus musculus Gallus gallus 
2010-06-02 | GSE22078 | GEO
TranscriptomicsZEB1 in 3T3-L1 differentiation (RNA-seq)
We aimed to characterise genome-wide gene expression changes upon ZEB1 knockdown in 3T3-L1 cells at distinct timepoints of adipogenic differentiation (days 0 and 2), performing replicate experiments.
ORGANISM(S): Mus musculus 
2014-09-17 | E-MTAB-2538 | biostudies-arrayexpress
GenomicsTissue-specific ChIP-seq for RNA pol II and H2A.v in Drosophila melanogaster
ChIP-seq study analysing adult Drosophila melanogaster head, glial, neuronal and fat body, as well as embryonic RNA pol II and H2A.v binding by employing the GAL4-UAS system to generate GFP-fusion proteins and ChIP-seq
ORGANISM(S): Drosophila melanogaster 
2013-08-25 | E-MTAB-1117 | biostudies-arrayexpress
GenomicsZEB1 in 3T3-L1 differentiation (ChIP-seq)
We aimed to characterise genome-wide ZEB1 binding pattern in 3T3-L1 cells at distinct timepoints of adipogenic differentiation (days -2, 0, 2 and 4). We performed replicate experiments at days -2 and 0 and single experiments at days 2 and 4.
ORGANISM(S): Mus musculus 
2014-09-17 | E-MTAB-2537 | biostudies-arrayexpress
TranscriptomicsMethylation profiling of healthy human CD4+ cells after CD3 and CD28 stimulation
Genome-wide DNA methylation reference profiles of CD4+ cells after CD3 and CD28 stimulation in two healthy human individuals using the MeDIP technique a custom oligonucleotide array targetting the vast majority of annotated TSSs and non-promoter CGIs in the human genome.
ORGANISM(S): Homo sapiens 
2010-03-23 | E-MTAB-207 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse liver with CEBPa wild type and knockout animals.
Expression analysis of CEBPa knockout effects on gene expression in adult mouse liver. We used a conditional knock out strategy to delete CEBPa specifically in adult mouse hepatocytes and analysed the resulting changes in gene expression by means of microarrays.
ORGANISM(S): Mus musculus 
2010-04-08 | E-MTAB-178 | biostudies-arrayexpress
GenomicsCTCF binding evolution in mammals
ChIP-seq study in human, macaque, mouse, rat and opossum for CTCF (milipore: 07-729 and custom AB in opossum), STAG1 in opossum (abcam: ab4457)
ORGANISM(S): Monodelphis domesticus 
2011-11-01 | E-MTAB-437 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human MCF7 cells in oestrogen treatment time course.
Expression analysis in human MCF7 cells after 3h, 6h or 12h of oestrogen treatment
ORGANISM(S): Homo sapiens 
2010-03-08 | E-MTAB-158 | biostudies-arrayexpress
GenomicsEvolutionary comparison of CTCF and YY1 binding in primate lymphoblastoid cell lines
We performed an evolutionary comparison of the binding of the TF CTCF in human, chimpanzee, gorilla, orang-utan, macaque, baboon and marmoset using lymphoblastoid cell lines (LCLs). We also probes YY1 binding in human, chimpanzee, orang-utan and baboon LCLs as well as human and mouse liver.
ORGANISM(S): Pan troglodytes 
2013-11-20 | E-MTAB-1511 | biostudies-arrayexpress
TranscriptomicsRNA-seq of mouse adipose stem and progenitor cells
Population control for the scRNA-seq based analysis a well-established fraction of mouse subcutaneous adipose-derived stromal vascular fraction (SVF) cells that is generally considered to harbour adipogenic stem and progenitor cells (ASPCs). We collected Lin- (CD31- CD45- TER119-) CD29+ CD34+ SCA1+ ...
ORGANISM(S): Mus musculus 
2018-05-01 | E-MTAB-5818 | biostudies-arrayexpress
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