Scott J J - OmicsDI

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Unknown (6689)
Transcriptomics (237)
Genomics (204)
Proteomics (180)
Metabolomics (31)
Multiomics (16)
Genomic (14)
Models (11)
Other (2)

Organisms

Homo sapiens (292)
Mus musculus (79)
Rattus norvegicus (12)
Saccharomyces cerevisiae (10)
Arabidopsis thaliana (10)
Drosophila melanogaster (9)
Fundulus heteroclitus (3)
Chlamydomonas reinhardtii (3)
Listeria monocytogenes (3)
Gasterosteus aculeatus (2)
Apis mellifera (2)
Schizosaccharomyces pombe (2)
Caenorhabditis elegans (2)
Escherichia coli (2)
Gallus gallus (2)
Candida albicans (2)
cellular organisms (1)
Pseudomonas syringae (1)
Pseudomonas syringae pv. syringae B728a (1)
Rhagoletis pomonella (1)
Helicobacter pylori 26695 (1)
Streptococcus pneumoniae TIGR4 (1)
Roseburia inulinivorans DSM 16841 (1)
Eucalyptus grandis (1)
Oncorhynchus nerka (1)
Drosophila yakuba (1)
Aspergillus niger (1)
Salmonella enterica (1)
Yarrowia lipolytica (1)
Bacillus anthracis (1)

Organisms

Aspergillus flavus var. flavus (1)
Drosophila melanogaster (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (261)
EGA (175)
pride (117)
MassIVE (36)
MetaboLights (30)
PeptideAtlas (15)
dbGaP (14)
BioModels (11)
ENA (7)
PAXDB (6)
jPOST (5)
geo (1)
GNPS (1)
iProX (1)
PanoramaPublic (1)

Tissue

Cell culture (16)
Others (11)
Epithelial cell (10)
Kidney (6)
Liver (6)
Blood plasma (5)
Colon (5)
T cell (5)
Embryonic stem cell (4)
Plasma Non-glyco (3)
Brain (3)
Primary cell (3)
Blood (2)
Blood cell (2)
Blood serum (2)
Cell suspension culture (2)
Dental plaque (2)
Early embryonic cell (2)
Fibroblast (2)
Heart (2)
Lymph node (2)
Macrophage (2)
Monocyte (2)
Permanent cell line cell (2)
Whole body (2)
Lung (1)
Aortic endothelial cell (1)
Aortic smooth muscle cell (1)
B cell (1)
Blood platelet (1)

Disease

Colon cancer (4)
Breast cancer (3)
Lymphoma (3)
Q fever (3)
Acute leukemia (2)
Cervix carcinoma (2)
Colitis (2)
Disease free (2)
XCGD (1)
Pretreatment primary leukemia (1)
Angiogenic chondrosarcoma (1)
Non-small Cell Lung Carcinoma (1)
Adult respiratory distress syndrome (1)
Autosomal recessive limb-girdle muscular dystrophy type 2C (1)
Cardiovascular system disease (1)
Chronic myeloid leukemia (1)
Developmental and epileptic encephalopathy 9 (1)
Hepatocellular carcinoma (1)
Malignant neoplasm of ovary (1)
Melanoma (1)
Pancreatic cancer (1)
Type 1 diabetes mellitus (1)

Technology Type

Mass Spectrometry (117)
Shotgun proteomics (75)
Mass spectrometry (27)
Bottom-up proteomics (18)
Affinity purification coupled with mass spectrometry proteomics (16)
Data-dependent acquisition (9)
SWATH MS (7)
Gel-based experiment (4)
NMR spectroscopy (3)
Top-down proteomics (3)
Mass spectrometry assay (2)
All-ion fragmentation (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
COMPLETE_GENOMICS, Complete Genomics (1)
Illumina HiSeq 2500, Illumina HiSeq 4000, ILLUMINA, NextSeq 500 (1)
Illumina HiSeq 2500, Illumina MiSeq, NextSeq 500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (ILLUMINA), AB SOLiD System (ABI_SOLID) (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (1)
Illumina OmniQuad 2.5 - CNVpartition (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
AB SOLiD System 3.0 (1)
Illumina HiSeq 2000 (1)
Illumina MiSeq (1)
Illumina Genome Analyzer II (1)
NMR spectroscopy assay (1)
HDMSE (1)

Instrument Platform

LTQ Orbitrap Velos (18)
Q Exactive (9)
Orbitrap Fusion Lumos (7)
Illumina NovaSeq 6000 (5)
NextSeq 500 (5)
Orbitrap Fusion (4)
Q Exactive HF (4)
Axon GenePix 4000B scanning hardware (3)
Orbitrap Eclipse (3)
Illumina MiSeq (2)
Bruker maXis ESI Quadrupole TOF (2)
Orbitrap Exploris 480 (2)
Q Exactive HF-X (2)
Q Exactive Plus (2)
BD FACS Aria Cell Sorter (1)
Ilumina HiScan H166 (1)
10X Genomics Chromium (1)
MoFlo XPD (Beckman Coulter, Fullerton, CA, USA) flow cytometer (1)
RiboZ (1)
Trizol (Invitrogen); FastPrep (MP Biochemicals) (1)
DASGIP bioreactors (1)
G2565BA DNA Scanner (1)
Affymetrix Gene Titan (1)
Illumina iScan (1)
Gene Titan (1)
HP GeneArray [Affymetrix/HP] (1)
Illumina Genome Analyzer IIx (1)
Ion Torrent Proton (1)
MinION (1)
Exactive Plus (1)

Publication Date

2013 (38)
2012 (38)
2010 (37)
2014 (30)
2008 (30)
2020 (28)
2025 (27)
2021 (25)
2011 (24)
2024 (23)
2019 (23)
2023 (23)
2022 (18)
2016 (18)
2007 (18)
2015 (17)
2018 (17)
2006 (14)
2026 (10)
2009 (8)
2005 (7)
2017 (7)
2004 (2)
2003 (1)

UNIPROT ID/AC

Q0WB82 (2)
P0AAD4 (2)
Q7CH92 (2)
Q7CHI6 (2)
Q0WI04 (2)
P0AGD3 (2)
Q7CJI9 (2)
Q4Z2Z4 (2)
Q7CJ22 (2)
Q7CKU7 (2)
Q74WT5 (2)
Q0WJB5 (2)
P60752 (2)
Q0WH20 (2)
P0ABU7 (2)
Q0WIZ0 (2)
Q7CGI6 (2)
P0ABV2 (2)
Q0WBR9 (2)
Q7CH41 (2)
Q180F2 (2)
Q7CG73 (2)
P25519 (2)
P0C0L7 (2)
Q0WCN6 (2)
Q0WD20 (2)
Q0WAH3 (2)
P0ABI4 (2)
P13738 (2)
Q7CG77 (2)

ENSEMBL ID

ENSG00000170477 (7)
ENSG00000229353 (3)
ENSG00000147251 (1)

CHEBI ID

CHEBI:9133 (5)
CHEBI:7340 (5)
CHEBI:7342 (5)
CHEBI:5900 (5)
CHEBI:8478 (5)
CHEBI:7710 (5)
CHEBI:8672 (5)
CHEBI:9905 (5)
CHEBI:33283 (5)
CHEBI:26007 (5)
CHEBI:8335 (5)
CHEBI:5809 (5)
CHEBI:9800 (5)
CHEBI:9769 (5)
CHEBI:5563 (5)
CHEBI:6232 (5)
CHEBI:63549 (5)
CHEBI:58370 (5)
CHEBI:7787 (5)
CHEBI:8394 (5)
CHEBI:42005 (5)
CHEBI:4581 (5)
CHEBI:42078 (5)
CHEBI:4412 (5)
CHEBI:6037 (5)
CHEBI:50277 (5)
CHEBI:47722 (5)
CHEBI:4413 (5)
CHEBI:4405 (5)
CHEBI:9850 (5)

Metabolite Name

Urea (9)
Hypoxanthine (8)
Uracil (8)
Glycine (8)
Fructose (7)
Adenosine (7)
Glycerol (7)
Myo-inositol (7)
Methionine sulfoxide (6)
Erythritol (6)
Cholesterol (6)
Uridine (6)
Taurine (6)
Nicotinamide (6)
Lysine (6)
Inosine (6)
Cytosine (6)
Citrulline (6)
Arginine (6)
Adenine (6)
Xanthine (6)
Choline (6)
Creatinine (6)
Glutamine (6)
Citrate (6)
Succinate (6)
Alanine (6)
Lactate (6)
Valine (6)
Isoleucine (6)

First Public Date

2022 (2)
2014 (2)
2026 (1)
2023 (1)
2021 (1)

Modelling Approach

Constraint-based model (7)
Other (2)
Ordinary differential equation model (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (10)
Associate Professor Department of Biochemistry Room 220, Research and Innovation Centre, University of Regina, Regina, Saskatchewan S4S 0A2 (4)
Lund University, Faculty of Medicine, Department of Clinical Sciences Lund, Division of Infection Medicine, Lund, Sweden (3)
University of Victoria (3)
Christchurch Heart Institute, Department of Medicine, University of Otago, Christchurch (2)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia (2)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Parkville, Victoria 3010, Australia (2)
Department of Pharmaceutical Sciences, Leslie Dan Faculty of Pharmacy, University of Toronto (2)
European Molecular Biology Laboratory (2)
Universitätsmedizin Greifswald Interfakultäres Institut für Genetik und Funktionelle Genomforschung Abteilung für Funktionelle Genomforschung Felix-Hausdorff-Straße 8 17487 Greifswald (2)
-Department of Microbiology and Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, USA. -Department of Medical Microbiology and Immunology, University of Alberta, Edmonton, Canada. (1)
1 School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia. 2 Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010, Australia (1)
1. Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, 3052, Victoria, Australia and Department of Medical Biology, The University of Melbourne, Royal Parade, Parkville, 3052, Victoria, Australia (1)
1Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Roosevelt Drive, Oxford, OX3 7FZ, UK (1)
Anonymous for double-blind review. (1)
Astbury Centre for Structural Molecular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK (1)
Bio21 Mass Spectrometry and Proteomics Facility, The University of Melbourne, Parkville, Victoria 3010, Australia (1)
Bio21 Mass Spectrometry and Proteomics Facility, The University of Melbourne, Parkville, Victoria 3052, Australia (1)
Biochemistry and Molecular Biology, University of British Columbia, Canada (1)
Biology Department University of Wisconsin-La Crosse 1725 State St. La Crosse, WI 54601 USA (1)
Bioscience Institute,Faculty for Medical Sciences at Newcastle University. Newcastle-Upon-Tyne United Kingdom NE24HH (1)
CIR, Queen’s Medical Research Institute, University of Edinburgh (1)
Canary Center at Stanford for Cancer Early Detection Department of Radiology School of Medicine Stanford University (1)
Center for Malaria Research, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802 (1)
Centre for High-throughput Biology, University of British Columbia, Vancouver, British Columbia,Canada, V6T 1Z4 (1)
Centre for High-throughput Biology, University of British Columbia, Vancouver, British Columbia,Canada, V6T 1Z4 ( lab head ) (1)
Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Clayton, Victoria, Australia (1)
Centre for Proteome Research, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool, L69 7ZB, U.K. (1)
Department for Systems Biology, Institut de recherches cliniques de Montréal (IRCM), Montréal, QC, Canada Département de biochimie et médecine moléculaire, Universitéde Montréal, Montréal, QC, Canada Division of Experimental Medicine, McGill University, Montreal, QC, Canada (1)
Department of Anatomy and Cell Biology, Université de Sherbrooke, Canada (1)

IsPrivate

False (11)

Model Flag

Non Kinetic (3)

Submitter Keywords

FROG (3)
Not Peer Reviewed (2)

Classification

fungi (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)
N6 (1)
N6-dimethyl-L-lysine (1)
Not available (1)

Study type

Transcription profiling by array (168)
RNA-seq of coding RNA (27)
ChIP-seq (15)
Unknown experiment type (13)
Comparative genomic hybridization by array (8)
Methylation profiling by high throughput sequencing (6)
Methylation profiling by array (4)
Cell line - High-throughput sequencing (3)
ChIP-chip by tiling array (2)
Genotyping by array (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of non coding RNA (2)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
Other (1)
MicroRNA profiling by array (1)
DNA-seq (1)
Proteomic profiling by array (1)

Release Date

2023 (712)
2022 (699)
2021 (699)
2025 (667)
2024 (587)
2020 (504)
2019 (457)
2018 (401)
2017 (364)
2016 (312)
2015 (301)
2014 (250)
2013 (193)
2012 (159)
2011 (138)
2010 (130)
2026 (90)
2008 (84)
2009 (76)
2007 (41)
2006 (31)
2005 (17)
2004 (11)
2003 (9)
2001 (8)
2002 (6)
1998 (2)
1999 (1)
1997 (1)

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Metabolic Biomarkers of Ageing in C57BL/6J Wild-Type and Flavin-Containing Monooxygenase 5 (FMO5)-Knockout Mice

It was recently demonstrated in mice that knockout of the flavin-containing monooxygenase 5 gene, Fmo5, slows metabolic ageing via pleiotropic effects. We have now used an NMR-based metabonomics approach to study the effects of ageing directly on the metabolic profiles of urine and plasma from male,...

2018-06-20 | MTBLS667 | MetaboLights

Genetic Determinants for Susceptibility to Staphylococcus aureus Infection in A/J and C57BL/6J

Although it has recently been shown that A/J mice are highly susceptible to Staphylococcus aureus sepsis as compared to C57BL/6J, the specific genes responsible for this differential phenotype are unknown. Using chromosome substitution strains (CSS), we found that factors on chromosomes (chr) 8, 11,...

ORGANISM(S): Mus musculus

2010-08-01 | E-GEOD-19668 | biostudies-arrayexpress

Aarskog-scott syndrome: a review and case report.

Not available

S-EPMC4155891 | biostudies-literature

Cross-Cultural Differences and Psychometric Properties of the Japanese Actions and Feelings Questionnaire (J-AFQ).

Not available

S-EPMC8417608 | biostudies-literature

Excised DNA circles from V(D)J recombination promote relapsed leukaemia.

Not available

S-EPMC12443594 | biostudies-literature

Testing for independence in J×K contingency tables with complex sample survey data.

Not available

S-EPMC4567525 | biostudies-literature

J-domain Proteins form Binary Complexes with Hsp90 and Ternary Complexes with Hsp90 and Hsp70.

Not available

S-EPMC10527347 | biostudies-literature

Gene expression profiling of a pressure-tolerant Listeria monocytogenes Scott A ctsR deletion mutant

Transcriptional profling of a Listeria monocytogenes under pressure comparing ctsR mutant and wild type one condition (pressure 450 Moa, 3min) experiment, mutant vs. wild type, 2 biological replicates, two technical replicates

ORGANISM(S): Listeria monocytogenes

2011-06-10 | E-GEOD-22819 | biostudies-arrayexpress

Cut-and-Run: A Distinct Mechanism by which V(D)J Recombination Causes Genome Instability.

Not available

S-EPMC6509286 | biostudies-literature

Transcription profiling of acteylcholine receptor immunization between RIIIS/J and B10.RIII mice

Comparison of acetylcholine receptor immunization between RIIIS/J and B10.RIII mice.

ORGANISM(S): Mus musculus

2004-03-11 | E-MEXP-86 | biostudies-arrayexpress

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