Scott J M JM - OmicsDI

Show results for

Unknown (1215)
Proteomics (33)
Genomics (29)
Transcriptomics (23)
Metabolomics (2)

Organisms

Homo sapiens (50)
Burkholderia cenocepacia K56-2Valvano (9)
Mus musculus (7)
Gasterosteus aculeatus (2)
Schizosaccharomyces pombe (2)
Oncorhynchus nerka (1)
Aspergillus niger (1)
Caenorhabditis elegans (1)
Gallus gallus (1)
Acinetobacter calcoaceticus/baumannii complex (1)
Bacteroides thetaiotaomicron (1)
Burkholderia cenocepacia (1)
Chlorocebus sabaeus (1)
Methylarcula sp. P638 (1)
Varanus komodoensis (1)

Repository

biostudies-arrayexpress (27)
EGA (25)
pride (25)
MassIVE (5)
jPOST (3)
MetaboLights (2)

Tissue

Blood plasma (1)
Blood serum (1)
Cell culture (1)
Cell suspension culture (1)
Fibroblast (1)
Gastrocnemius (1)
Kidney (1)
Monocyte (1)
Muscle fibre (1)
Plasma membrane (1)

Disease

Acute leukemia (1)
Autosomal recessive limb-girdle muscular dystrophy type 2C (1)
Lymphoma (1)

Technology Type

Mass Spectrometry (25)
Bottom-up proteomics (12)
Shotgun proteomics (10)
Data-dependent acquisition (3)
Mass spectrometry (2)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500, Illumina HiSeq 4000, ILLUMINA, NextSeq 500 (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)

Instrument Platform

Liquid Chromatography MS - - - Q Exactive (2)
G2565BA DNA Scanner (1)
Orbitrap Eclipse (1)
Orbitrap Exploris 480 (1)
Q Exactive (1)
Q Exactive HF (1)
TripleTOF 5600 (1)

Publication Date

2025 (18)
2013 (9)
2010 (5)
2011 (4)
2024 (4)
2014 (3)
2008 (3)
2026 (3)
2022 (3)
2012 (2)
2019 (2)
2015 (1)
2020 (1)
2016 (1)
2023 (1)
2021 (1)
2017 (1)

CHEBI ID

CHEBI:10072 (1)
CHEBI:11805 (1)
CHEBI:119486 (1)
CHEBI:132948 (1)
CHEBI:132983 (1)
CHEBI:132991 (1)
CHEBI:133046 (1)
CHEBI:133066 (1)
CHEBI:133139 (1)
CHEBI:133141 (1)
CHEBI:133144 (1)
CHEBI:133172 (1)
CHEBI:133185 (1)
CHEBI:133223 (1)
CHEBI:133226 (1)
CHEBI:133432 (1)
CHEBI:133460 (1)
CHEBI:133532 (1)
CHEBI:133559 (1)
CHEBI:133565 (1)
CHEBI:133570 (1)
CHEBI:133617 (1)
CHEBI:133636 (1)
CHEBI:133646 (1)
CHEBI:133647 (1)
CHEBI:133649 (1)
CHEBI:133672 (1)
CHEBI:133675 (1)
CHEBI:133677 (1)
CHEBI:133693 (1)

Metabolite Name

1,3-dimethylurate (1)
1,7-dimethylurate (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-docosahexaenoyl-GPC (P-16:0/22:6)* (1)
1-(1-enyl-palmitoyl)-2-docosahexaenoyl-GPE (P-16:0/22:6)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)* (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPC (P-18:0/18:2)* (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2)* (1)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (1)
1-docosahexaenoyl-GPE (22:6)* (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6)* (1)
1-linoleoyl-GPC (18:2) (1)
1-linoleoyl-GPE (18:2)* (1)
1-margaroyl-2-linoleoyl-GPC (17:0/18:2)* (1)
1-methyl-4-imidazoleacetate (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
1-methylurate (1)
1-myristoyl-2-palmitoyl-GPC (14:0/16:0) (1)
1-oleoyl-2-docosahexaenoyl-GPC (18:1/22:6)* (1)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2)* (1)
1-oleoyl-2-linoleoyl-GPE (18:1/18:2)* (1)
1-oleoyl-GPI (18:1) (1)
1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4)* (1)
1-palmitoyl-2-docosahexaenoyl-GPC (16:0/22:6) (1)
1-palmitoyl-2-docosahexaenoyl-GPE (16:0/22:6)* (1)

Study type

Transcription profiling by array (17)
Comparative genomic hybridization by array (2)
ChIP-seq (2)
Methylation profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Genotyping by array (1)
RNA-seq of coding RNA (1)

Release Date

2021 (132)
2022 (131)
2023 (103)
2020 (91)
2024 (89)
2019 (83)
2015 (82)
2018 (82)
2025 (77)
2017 (67)
2014 (58)
2013 (55)
2016 (55)
2012 (35)
2011 (31)
2010 (26)
2009 (19)
2008 (15)
2026 (8)
2004 (2)
2005 (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (10)
1. Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, 3052, Victoria, Australia and Department of Medical Biology, The University of Melbourne, Royal Parade, Parkville, 3052, Victoria, Australia (1)
Associate Professor of Oncological Sciences Huntsman Cancer Institute at the University of Utah (1)
Bioscience Institute,Faculty for Medical Sciences at Newcastle University. Newcastle-Upon-Tyne United Kingdom NE24HH (1)
Centre for Proteome Research, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool, L69 7ZB, U.K. (1)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (1)
Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO 63110, USA. (1)
Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia; Biomolecular Discovery Research Centre, Macquarie University, Sydney, NSW, Australia (1)
Department of Radiology, Division of Cell Biology & Imaging, University of Massachusetts Medical School, Worcester, MA, USA (1)
Department of Women and Children’s Health, Science for Life Laboratory, Karolinska Institutet, Stockholm, Sweden (1)
Deputy Director, The Walter and Eliza Hall Institute of Medical Research (WEHI) Professor and NHMRC Leadership Fellow Laboratory Head, Inflammation Division, WEHI 1G Royal Parade Parkville, VIC 3052, Australia (1)
George Mason University, Department of Chemistry and Biochemistry, Bishop lab (1)
Head, Inflammation Division Professor and NHMRC Leadership Fellow Walter and Eliza Hall Institute of Medical Research 1G Royal Parade Parkville, VIC 3052, Australia (1)
Head, Inflammation Division Professor and NHMRC Leadership Fellow Walter and Eliza Hall Institute of Medical Research 1G Royal Parade Parkville, VIC 3052, Australia (lab head) (1)
School of Chemistry and Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010, Australia (1)
University of Victoria (1)

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The quantitative genetics of transcriptional variation in stickleback liver.

Total RNA was extracted from liver tissues of lab-reared threespine stickleback. First generation fish originating from the Baltic Sea near Helsinki (Finland) were bred using a paternal half-sib design. At 6 months individuals were randomly assigned to either a treatment or control group: the tem...

ORGANISM(S): Gasterosteus aculeatus

2014-12-03 | E-MTAB-3098 | biostudies-arrayexpress

Ouabain-regulated phosphoproteome reveals molecular mechanisms for Na⁺, K⁺-ATPase control of cell adhesion, proliferation, and survival.

Not available

S-EPMC6704450 | biostudies-literature

Structural and functional characterization of the N-terminus of Schizosaccharomyces pombe Cwf10

The spliceosome is a dynamic macromolecular machine that catalyzes the removal of introns from pre-mRNA to make mature message. Schizosaccharomyces pombe Cwf10 (homolog Saccharomyces cerevisiae Snu114 and of Human U5-116K), an integral member of the U5 snRNP, is a GTPase that shares sequence homolog...

ORGANISM(S): Schizosaccharomyces pombe

2013-09-25 | E-GEOD-47573 | biostudies-arrayexpress

Biases in Recommendations for and Acceptance of Prostate Biopsy Significantly Affect Assessment of Prostate Cancer Risk Factors: Results From Two Large Randomized Clinical Trials.

Not available

S-EPMC5455311 | biostudies-literature

Advancing medical laboratory practice in Pakistan: insights from a focus group study on technologists' training needs.

Not available

S-EPMC11360743 | biostudies-literature

Frequency of allogeneic hematopoietic cell transplantation among patients with high- or intermediate-risk acute myeloid leukemia in first complete remission.

Not available

S-EPMC3805928 | biostudies-literature

Ser(120) of Ubc2/Rad6 regulates ubiquitin-dependent N-end rule targeting by E3{alpha}/Ubr1.

Not available

S-EPMC3009855 | biostudies-literature

Phase Ib/II Study of Pembrolizumab and Pegylated-Interferon Alfa-2b in Advanced Melanoma.

Not available

S-EPMC6286160 | biostudies-literature

Global analysis of the effects of attenuated and VP3 mutant isolates of chicken anaemia virus on host gene expression using oligonucleotide arrays.

Two highly-passaged attenuated and three VP3 CAV mutant isolates were used in this study with the aim of elucidating the interactions of each of these proteins with the host cell.

ORGANISM(S): Gallus gallus

2008-11-01 | E-TABM-357 | biostudies-arrayexpress

Regulation of the extrinsic apoptotic pathway by microRNA-21 in alcoholic liver injury.

Not available

S-EPMC4183793 | biostudies-literature

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1302 Results

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