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TranscriptomicsRNA-seq of zebrafish embryos with mutations in a muscle-specific kinase and the giant titin protein
RNA-seq of zebrafish embryos with mutations in srpk3 (sa1890 allele) and/or ttn.1 (sa5562 allele). Each of the 24 samples (six samples for each of four genotypes) represents RNA from a pool of three 5 dpf zebrafish embryos.
ORGANISM(S): Danio rerio 
2024-02-09 | E-MTAB-12934 | biostudies-arrayexpress
TranscriptomicsRNA-seq of wild-type zebrafish embryos developmentally exposed to three addictive drugs
RNA-seq of wild-type Tüpfel long fin (TLF) zebrafish embryos developmentally exposed to three addictive drugs - 5 µM nicotine, 1.14 µM oxycodone and 5 µM amphetamine. Each of the 24 samples (6 samples per drug, plus 6 control samples) represents RNA from a pool of seven 5 dpf zebrafish embryos, expo...
ORGANISM(S): Danio rerio 
2022-01-24 | E-MTAB-11086 | biostudies-arrayexpress
TranscriptomicsBaseline expression from transcriptional profiling of zebrafish developmental stages
Establish baseline expression transcriptional signatures for zebrafish developmental stages. Total RNA was extracted from single wild type zebrafish embryos at a series of different developmental stages. RNA from 12 embryos was pooled to generate a replicate.The RNA was DNase treated. Stranded RNAs...
ORGANISM(S): Danio rerio 
2016-06-12 | E-ERAD-475 | biostudies-arrayexpress
TranscriptomicsGenome-wide mapping of Hif-1α binding sites in zebrafish [microarray]
Analysis of gene expression changes in the von Hippel Lindau when mutant compared to wild-type at 4dpf using a whole genome microarray expression profiling. The von Hippel Lindau mutant displays a systemic hypoxic response under normoxic conditions. We performed single-colour microarrays to identify...
ORGANISM(S): Danio rerio 
2016-03-22 | E-GEOD-70885 | biostudies-arrayexpress
GenomicsGenome-wide mapping of Hif-1α binding sites in zebrafish [ChIP-seq]
Analysis of the binding sites of Hif-1α in both wild-type and von Hippel Lindau mutant zebrafish lines at 4dpf by ChIP linked next generation sequencing. The von Hippel Lindau mutant displays a systemic hypoxic response under normoxic conditions. Results show the extent of Hif-1α binding to the ge...
ORGANISM(S): Danio rerio 
2016-03-22 | E-GEOD-70727 | biostudies-arrayexpress
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