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TranscriptomicsOryza sativa strain:Nipponbare Transcriptome or Gene expression
To better understand the complex mechanisms regulating Pi homeostasis in rice (Oryza sativa L. cv. Nipponbare), a time course experiment was performed, where pre-germinated seedlings were grown hydroponically for two weeks on Pi-sufficient medium (0.32 mM Pi), before transferring half of the plants ...
ORGANISM(S): Oryza sativa Japonica Group 
2013-11-25 | E-MTAB-4427 | biostudies-arrayexpress
TranscriptomicsOryza sativa cultivar:Nipponbare Transcriptome or Gene expression
A comprehensive time-course experiment of Pi-starved plants was undertaken, spanning medium (3 and 7 days), and long-term (21 days up to 52 days) Pi deprivation (−Pi), as well as both short term (1 and 3 days) and long-term (31 days) recovery. The 52 days time point consisting of 21 days starvatio...
ORGANISM(S): Oryza sativa Japonica Group 
2015-07-31 | E-MTAB-4334 | biostudies-arrayexpress
TranscriptomicsOryza sativa Raw sequence reads
In order to shed light on the DNA methylation pathway mediating Pi starvation-induced changes in DNA methylation, the phosphate starvation experiment was repeated using an RNAi line that knocks DCL3a, a key factor involved in the canonical RdDM pathway.
ORGANISM(S): Oryza sativa Japonica Group 
2015-07-31 | E-MTAB-4347 | biostudies-arrayexpress
TranscriptomicsArabidopsis thaliana strain:Col-0 Epigenomics
Cytosine DNA methylation (mC) is a genome modification that can regulate the expression of coding and non-coding genetic elements. However, little is known about the involvement of mC in response to environmental cues. We performed whole genome bisulfite sequencing to assess the spatio-temporal dyna...
ORGANISM(S): Arabidopsis thaliana 
2015-05-02 | E-MTAB-4211 | biostudies-arrayexpress
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