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MetabolomicsCascading effects of root microbial symbiosis on the development and metabolome of the insect herbivore Manduca sexta L

Root mutualistic microbes can modulate the production of plant secondary metabolites affecting plant–herbivore interactions. Still, the main mechanisms underlying the impact of root mutualists on herbivore performance remain ambiguous. In particular, little is known about how changes in the plant...

2023-09-12 | MTBLS2700 | MetaboLights
TranscriptomicsInvolvement of microRNA-related regulatory pathways in glucose-mediated control of Arabidopsis early seedling development
In plants, sugars such as glucose act as signaling molecules that promote changes in gene expression programs impacting on growth and development. Recent evidences have revealed the potential participation of mRNA decay control in some aspects of glucose-mediated regulatory responses suggesting a r...
ORGANISM(S): Arabidopsis thaliana 
2013-09-06 | E-GEOD-43546 | biostudies-arrayexpress
MetabolomicsEffects of Trichoderma and Salicylic Acid/Methyl Jasmonate on the Growth, Development, and Lipid Metabolism of Codonopsis pilosula

Endophytic fungi and phytohormone signaling can jointly influence growth–defense trade-offs in medicinal plants by reprogramming metabolism in a stage-dependent manner. To elucidate how the endophytic fungus Trichoderma longibrachiatum FG and exogenous salicylic acid (SA) and methyl jasmonat...

2026-03-24 | MTBLS14124 | MetaboLights
TranscriptomicsAtbZIP16 integrates light and hormone signaling pathways to regulate Arabidopsis early seedling development
In response to environmental light signals, transcriptomic adjustment plays an important role in Arabidopsis seed germination and seedling development. G-box cis-element is commonly present in promoters of genes positively or negatively responding to the light signal. For the pursuit of additional t...
ORGANISM(S): Arabidopsis thaliana 
2013-07-22 | E-GEOD-30910 | biostudies-arrayexpress
ProteomicsPhosphoproteomics of Jatropha curcas seedling under chilling stress
As a promising energy plant for biodiesel, Jatropha curcas is a tropical and subtropical shrub. Chilling is a major abiotic stress affecting the growth and development of J. curcas. In this study, we adopt the phosphoproteomic analysis, physiological measurement, ultrastructure observation to illust...
ORGANISM(S): Jatropha curcas 
2019-01-09 | PXD011438 | Pride
Jatropha curcas  phosphoproteomics  seedling  chilling stress  regulated mechanism 
GenomicsGenome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq.
In order to dissect the gene regulatory network during the functional transition of cotyledons from non-photosynthetic storage tissue to metabolically active photosynthetic tissue, we constructed ChIP-Seq libraries for NAC and YABBY transcription factors using pooled cotyledons from seedling develop...
ORGANISM(S): Glycine max 
2013-08-14 | E-GEOD-42422 | biostudies-arrayexpress
TranscriptomicsRNA-seq of seven stages of soybean cotyledon development
To understand the genetic mechanisms involved in the functional transition of cotyledons from non-photosynthetic storage tissue to metabolically active photosynthetic tissue during soybean seedling development, we constructed seven different RNA-Seq libraries using cotyledons from each developmental...
ORGANISM(S): Glycine max 
2014-07-29 | E-GEOD-42550 | biostudies-arrayexpress
ProteomicsThe Arabidopsis mature endosperm promotes seedling cuticle formation via release of sulfated peptides
In Arabidopsis mature seeds, the onset of the embryo-to-seedling transition is nonautonomously controlled, being blocked by endospermic abscisic acid (ABA) release under unfavorable conditions. Mature embryos lack an impermeable cuticle, unlike seedlings, consistent with their endospermic ABA uptake...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2021-11-10 | PXD028576 | Pride
Psy1 Arabidopsis Development Seed Cuticle Endosperm 
GenomicsDNase I hypersensitive sites in two tissues of rice
Gene expression is controlled by the complex interaction of transcription factors binding to promoters and other regulatory DNA elements. One common characteristic of the genomic regions associated with regulatory proteins is a pronounced sensitivity to DNase I digestion. We generated genome-wide ...
ORGANISM(S): Oryza sativa 
2011-11-09 | E-GEOD-26610 | biostudies-arrayexpress
TranscriptomicsBarley Germination and Seedling Growth Time Course
Analysis of barley grains/seedlings representing six well characterized and distinct germination stages over the course of seed germination and seedling growth. Three biological replications, six developmental stages.
ORGANISM(S): Hordeum vulgare 
2011-04-01 | E-GEOD-23595 | biostudies-arrayexpress
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