Selectivity - OmicsDI

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Unknown (31793)
Genomics (810)
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Organisms

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synthetic construct (34)
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Halobacterium salinarum NRC-1 (15)
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Glycine max (1)

Organisms

Homo sapiens (263)
Mus musculus (111)
Halobacterium salinarum NRC-1 (14)
Saccharomyces cerevisiae (13)
synthetic construct (13)
Drosophila melanogaster (8)
Arabidopsis thaliana (6)
Candida albicans (4)
Rattus norvegicus (4)
Escherichia coli (3)
Metridium senile (2)
marine Metazoa environmental sample (2)
Escherichia coli str. K-12 substr. MG1655 (2)
fermentation metagenome (2)
Caenorhabditis elegans (2)
Serratia marcescens (2)
human gut metagenome (2)
Inovirus M13 (1)
Anguilla anguilla (1)
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Omphalotus olearius (1)
Methylorubrum extorquens AM1 (1)
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Staphylococcus aureus subsp. aureus NCTC 8325 (1)
Streptocarpus ionanthus (1)
Caulobacter vibrioides NA1000 (1)
uncultured prokaryote (1)

Repository

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geo (483)
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COVID-19 (2)
Myeloid neoplasm (1)
Burkitt's lymphoma (1)
Mixoid liposarcoma (1)
Pancreatic Neoplasms (1)
Neoplasms (1)
Acute myeloid leukemia with BCR-ABL1 (1)
Autoimmune disease (1)
Hepatitis B (1)

Technology Type

Mass Spectrometry (477)
Shotgun proteomics (232)
Bottom-up proteomics (118)
Affinity purification coupled with mass spectrometry proteomics (61)
Data-dependent acquisition (58)
KINOMEscan (56)
Fluorescence intensity (56)
Data-independent acquisition (29)
Mass spectrometry (19)
SWATH MS (19)
Gel-based experiment (16)
Top-down proteomics (15)
Chemical cross-linking coupled with mass spectrometry proteomics (14)
SRM/MRM (11)
HDMSE (9)
Mass spectrometry assay (5)
All-ion fragmentation (5)
NMR spectroscopy (2)
MSE (2)
DiaPASEF (2)
Complete Genomics, Illumina HiSeq 2000 (1)
Complete Genomics, Complete Genomics - CG Build 1.4.2.8 (1)
PAcIFIC (1)
Mass spectrometry imaging (1)
Affinity proteomics (1)

Instrument Platform

Q Exactive (14)
Orbitrap Fusion Lumos (14)
Orbitrap Eclipse (9)
Q Exactive Plus (7)
Orbitrap Exploris 480 (7)
LTQ Orbitrap Elite (5)
Orbitrap Fusion (5)
Agilent High resolution C scanner (4)
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Instrument (4)
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NextSeq 500 (3)
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MaXis (2)
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Unknown (1)
E.Z.N.A. Total RNA Kit I (Omega Bio-tek) (1)
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Illumina Genome Analyzer II (1)
NA (1)
DNBSEQ-T7 (1)
Illumina HiSeq 1500 (1)
Agilent 1290 Infinity II LC System (Agilent Technologies) coupled with a qTOF 6550 mass detector (1)
Orbitrap Q Exactive HF (1)
Xevo Q-Tof (1)
Orbitrap Exploris 240 (1)

Publication Date

2025 (165)
2023 (160)
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2022 (100)
2016 (96)
2021 (83)
2020 (68)
2019 (63)
2011 (44)
2017 (41)
2018 (41)
2014 (40)
2013 (40)
2015 (38)
2006 (23)
2012 (22)
2010 (17)
2005 (9)
2009 (8)
2008 (4)
2007 (3)

UNIPROT ID/AC

MBD3_MOUSE (6)
10090.ENSMUSP00000113068 (6)
KXDL1_MOUSE (6)
GSTP2_MOUSE (6)
E9Q6E5_MOUSE (6)
NHP2_MOUSE (6)
RL18A_MOUSE (6)
CALM1_MOUSE (6)
UIF_MOUSE (6)
PAF1_MOUSE (6)
CATIN_MOUSE (6)
WDR33_MOUSE (6)
F6S4B9_MOUSE (6)
HMGA1_MOUSE (6)
Q9EQC8_MOUSE (6)
TRA2B_MOUSE (6)
PDIP3_MOUSE (6)
ZBED6_MOUSE (6)
SMCA2_MOUSE (6)
D3YWX2_MOUSE (6)
ARI1A_MOUSE (6)
SRS10_MOUSE (6)
CTCF_MOUSE (6)
10090.ENSMUSP00000136358 (6)
P5CR3_MOUSE (6)
10090.ENSMUSP00000048857 (6)
10090.ENSMUSP00000089346 (6)
SBP2_MOUSE (6)
10090.ENSMUSP00000089293 (6)
P10276 (1)

CHEBI ID

CHEBI:15843 (7)
CHEBI:64017 (6)
CHEBI:15647 (6)
CHEBI:15551 (6)
CHEBI:27485 (5)
CHEBI:72665 (5)
CHEBI:63966 (5)
CHEBI:63969 (5)
CHEBI:19138 (5)
CHEBI:72643 (5)
CHEBI:60943 (5)
CHEBI:15650 (5)
CHEBI:72606 (5)
CHEBI:15547 (5)
CHEBI:15544 (5)
CHEBI:15555 (5)
CHEBI:15553 (5)
CHEBI:28158 (5)
CHEBI:72605 (5)
CHEBI:63970 (4)
CHEBI:63974 (4)
CHEBI:63981 (4)
CHEBI:15646 (4)
CHEBI:52449 (4)
CHEBI:16978 (4)
CHEBI:28300 (4)
CHEBI:15729 (4)
CHEBI:42492 (1)
CHEBI:15367 (1)
CHEBI:16670 (1)

Metabolite Name

Arachidonic acid (5)
12,13-DiHOME (5)
12-HETE (5)
8-HETE (5)
15-HETE (5)
4-HDoHE (5)
7-HDoHE (5)
5-HETE (5)
LTE4 (5)
LTB4 (5)
PGA2 (5)
11-HETE (5)
PGE1 (5)
PGD2 (5)
PGE2 (5)
5,6-DiHETrE (4)
18-HEPE (4)
5-oxoETE (4)
LTC4 (4)
PGJ2 (4)
8,9-DiHETrE (4)
14,15-DiHETrE (4)
11,12-DiHETrE (4)
12,13-EpOME (4)
9,10-EpOME (4)
19(20)-DiHDPA (4)
19(20)-EpDPE (4)
5,6-EET (4)
13-oxoODE (4)
HXB3 (4)

First Public Date

2026 (117)
2025 (101)
2024 (83)
2023 (74)
2014 (60)
2022 (49)
2019 (41)
2021 (37)
2020 (37)
2018 (21)
2017 (20)
2013 (17)
2015 (15)
2016 (14)
2012 (1)

Modelling Approach

Ordinary differential equation model (6)
Mathematical model (1)

Study status

Completed (2)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (22)
Imperial College London (10)
Cellzome (9)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (9)
Professor of Molecular Physiology, Leiden Institute of Chemistry, Leiden University, The Netherlands (7)
Chair of Proteomics and Bioanalytics, Technische Universität München, Germany (6)
Vividion Therapeutics (4)
University at buffalo, SUNY (3)
Department of Biology, University of Rochester, NY, USA (3)
EDyP (3)
Protim, Univ Rennes, Inserm, EHESP, Irset – UMR_S 1085 (2)
college of pharmacy, Nankai university,Tianjin, 300353, China (2)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry ( lab head ) (2)
Analytical Chemistry, Department of Chemistry – BMC and Science for Life Laboratory, Uppsala University, Box 599, 751 24 Uppsala, Sweden (2)
Boston University Medical Campus 670 Albany St., Rm. 509 Boston, MA 02118 USA (2)
Departments of Chemistry, Biological Sciences, Microbiology and Immunology, Vanderbilt University (2)
State Key Laboratory of Medical Proteomics, National Chromatographic R. & A. Center, CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China. (2)
Queen's University Belfast (2)
Department of Chemical and Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel (2)
Institute of Microbiology,The Czech Academy of Sciences (2)
Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, 9500 Euclid Avenue, NE-50, Cleveland, Ohio 44195, United States. (2)
Department of Chemistry, Scripps Research (2)
Department of Cell Biology, Harvard Medical School, Boston MA 02115 (2)
Abbvie Bioresearch Center (2)
Institute of Organic Chemistry and Biochemistry of the CAS (2)
Moffitt Cancer Center (2)
University of Modena and Reggio Emilia (2)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (2)
Northeastern University (2)
Department of Molecular Physiology, Leiden Institute of Chemistry, Leiden University (2)

Keyword

Pembrolizumab (1)
Advanced (1)

IsPrivate

False (9)

Model Flag

Non Kinetic (1)

Classification

bacteria (11)
fungi (4)
viruses (1)
protozoa (1)

Modification

15.994915 (3)
57.021464 (3)
42.010565 (2)
4-tetrahydrothiazine-3-carboxylic acid (2)
26.01565 (1)
42.04695 (1)
229.162932 (1)
28.0313 (1)
144.102062 (1)
0.984016 (1)
79.966331 (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
-17.026549 (1)
4x(15)N labeled L-arginine (1)
N6-dimethyl-L-lysine (1)
+3amu) (1)

Study type

Transcription profiling by array (77)
RNA-seq of coding RNA (23)
ChIP-seq (14)
Other (11)
Proteomic profiling by array (4)
Animal - One-color microarray (3)
RNA-seq of non coding RNA (3)
RIP-chip by array (2)
DNA-seq (2)
Interventional (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
MicroRNA profiling by array (1)

Release Date

2025 (3621)
2022 (3501)
2023 (3251)
2021 (2902)
2024 (2809)
2020 (2620)
2019 (2081)
2018 (1901)
2017 (1510)
2016 (1276)
2015 (1134)
2014 (929)
2013 (748)
2012 (670)
2011 (606)
2026 (564)
2010 (492)
2009 (395)
2008 (293)
2007 (182)
2006 (132)
2005 (83)
2004 (80)
2003 (51)
2002 (36)
2001 (28)
2000 (19)
1999 (10)
1998 (8)
1997 (4)

Location

United States (1)
France (1)

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Polyphenolic Profiling of Plants and Edible Mushrooms to Aid Characterizing Polyphenol Oxidase Selectivity

Polyphenol oxidases are important metalloenzymes that catalyze the oxidation of polyphenols. Organisms can contain multiple isoenzymes whose possible different functionality is not understood. Moreover, their substrate preference is still unexplored, and a working hypothesis assumes their specifi...

2025-08-07 | MTBLS8782 | MetaboLights

Rules governing translation selectivity under limiting ribosome availability

PRJNA513511 | ENA

Substrate selectivity for semisynthetic CK2 proteins

This SuperSeries is composed of the following subset Series: GSE33149: Substrate selectivity for semisynthetic CK2 proteins with various posttranslational modifications GSE33150: Substrate selectivity for semisynthetic CK2 proteins with Pin1 Refer to individual Series

ORGANISM(S): synthetic construct

2011-10-24 | E-GEOD-33151 | biostudies-arrayexpress

A Workflow for Transcriptome-wide Assessment of Antisense Oligonucleotide Selectivity

PRJNA1247536 | ENA

Modulating the selectivity of affinity absorbents to multi-phosphopeptides by a novel competitive substitution strategy

Although many affinity adsorbents have been developed for phosphopeptides enrichment, high-specifically capturing the multi-phosphopeptides is still a big challenge. Here, we investigated the mechanism of phosphate ions coordination and substitution on affinity adsorbents surfaces and modulated the ...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-03-29 | MSV000080735 | MassIVE

Tau drives translational selectivity by interacting with ribosomal proteins

PRJNA496504 | ENA

Robust Cardiac Reprogramming Systems with Selectivity to Cardiac Fibroblasts

PRJNA878785 | ENA

Origins of proprioceptor feature selectivity and topographic maps in the Drosophila leg

PRJNA989534 | ENA

Studying the selectivity of a small molecule Synucleozid on transcriptome

PRJNA531895 | ENA

Kinetics of cytokine receptor trafficking determine signaling and functional selectivity

PRJNA541500 | ENA