Sensory neuron - OmicsDI

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Danio rerio (26)
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Aplysia californica (5)
Canis lupus familiaris (5)
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Dictyostelium discoideum (4)
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Microcebus murinus (1)

Organisms

Mus musculus (193)
Homo sapiens (31)
Drosophila melanogaster (13)
Caenorhabditis elegans (10)
Rattus norvegicus (9)
Danio rerio (8)
Macaca mulatta (4)
Helicoverpa assulta (2)
Leucoraja erinaceus (2)
Aplysia californica (2)
Apis mellifera (2)
Sus scrofa (2)
Scopula subpunctaria (1)
Loxostege sticticalis (1)
Petromyzon marinus (1)
Helicoverpa armigera (1)
Callosobruchus maculatus (1)
Taeniopygia guttata (1)
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Mesocricetus auratus (1)
Galleria mellonella (1)
Macaca fascicularis (1)
Ambystoma mexicanum (1)
Canis lupus familiaris (1)
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Repository

biostudies-arrayexpress (799)
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geo (257)
pride (22)
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EGA (11)
iProX (3)
jPOST (3)
MetaboLights (3)
BioModels (1)
dbGaP (1)

Tissue

Brain (6)
Neuron (6)
Cell culture (4)
Sensory neuron of dorsal root ganglion (3)
Dendritic cell (1)
Dorsal root ganglion (1)
Electrically active cell (1)
Embryonic stem cell (1)
Liver (1)
Mechanoreceptor cell (1)
Nerve (1)
Olfactory receptor neuron (1)
Pain receptor cell (1)
Peritoneal fluid (1)
Permanent cell line cell (1)
Sensory neuron (1)
Sensory processing neuron (1)
Skin (1)
Spinal cord (1)
Spinal ganglion (1)
Spinal root (1)
Testis (1)

Disease

Normal (2)
Disease free (2)
Early-life seizures (1)
Parkinson's disease (1)
Diabetes, diabetic peripheral neuropathy (1)
Bordetella pertussis inoculated (1)
Temporal lobe epilepsy (1)
Glioblastoma (1)
Adenocarcinoma (1)
Not applicable (1)
Control (1)
Invasive ductal carcinoma (1)
Breast cancer (1)
Fragile X syndrome (1)
Herpes simplex (1)
Neuropathy (1)
Sciatic nerve (1)
Sensory peripheral neuropathy (1)

Technology Type

Mass Spectrometry (22)
Shotgun proteomics (11)
Bottom-up proteomics (5)
Gel-based experiment (4)
Data-independent acquisition (3)
Affinity purification coupled with mass spectrometry proteomics (2)
ILLUMINA, Illumina MiSeq, Illumina HiSeq 2000 (1)
HiSeq X Ten, ILLUMINA (1)
Illumina HiSeq 2500 (1)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Mass spectrometry (1)
Data-dependent acquisition (1)
DiaPASEF (1)

Instrument Platform

Illumina NovaSeq 6000 (73)
Illumina HiSeq 2500 (48)
NextSeq 500 (35)
Illumina HiSeq 4000 (32)
Illumina HiSeq 2000 (21)
NextSeq 550 (16)
Illumina MiSeq (6)
Illumina HiSeq 3000 (6)
HiSeq X Ten (4)
HPC cluster Lobo (3)
NextSeq 2000 (3)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
GeneChip Scanner 3000 7G (2)
Agilent G2565AA and G2565BA Microarray Scanner (2)
NA (2)
Illumina HiSeq 1500 (2)
Gentle MACS; BD FACS Aria III (1)
ICELL8 MultiSample NanoDispenser (1)
Bravo automated liquid handling robot station (Agilent) (1)
STAR v2.5.3a, rpkmforgenes, RSeQC 2.6.1 (1)
Illumina Nextera XT index kits (Set A–D) (1)
Oligo(dT) primer and SuperScript II reverse transcriptase (ThermoFisher Scientific), TapeStation 4200 or 2100 Bioanalyzer with a DNA High Sensitivity chip (Agilent Biotechnologies) (1)
Aria III (BD Biosciences) (1)
Chromium Next GEM Chip G (1)
10X v3 (1)
BD FACS ARIA III analyser (1)
10x Chromium controller (1)
DNBSEQ-G400 FAST (1)
10X Genomics Chromium v3.1 with multiplexing kit (1)
Illumina HiSeq 4000 system (1)

Publication Date

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2018 (38)
2019 (35)
2017 (23)
2009 (21)
2007 (16)
2006 (5)
2005 (2)
2004 (2)

CHEBI ID

CHEBI:16830 (1)
CHEBI:66860 (1)
CHEBI:66855 (1)
CHEBI:18139 (1)
CHEBI:66854 (1)
CHEBI:16016 (1)
CHEBI:33984 (1)
CHEBI:28315 (1)
CHEBI:30813 (1)
CHEBI:66847 (1)
CHEBI:28009 (1)
CHEBI:28260 (1)
CHEBI:18222 (1)
CHEBI:91315 (1)
CHEBI:38083 (1)
CHEBI:64424 (1)
CHEBI:29042 (1)
CHEBI:22599 (1)
CHEBI:33942 (1)
CHEBI:27971 (1)
CHEBI:16024 (1)
CHEBI:64519 (1)
CHEBI:64525 (1)
CHEBI:64526 (1)
CHEBI:64446 (1)
CHEBI:66859 (1)
CHEBI:64504 (1)
CHEBI:64520 (1)
CHEBI:64523 (1)
CHEBI:64433 (1)

Metabolite Name

2-(2,5-dihydroxy-4-methoxyphenyl)-3,5,6,7-tetrahydroxy-3,4-dihydro-2H-1-benzopyran-4-one; 3-(2,5-dihydroxy-4-methoxyphenyl)-1-(2,3,4,6-tetrahydroxyphenyl)propane-1,2-dione; 3,5,7-trihydroxy-6-methoxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-one; 3,5,7-trihydroxy-6-methoxy-2-(2,3,4-trihydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-one; 3,5,7-trihydroxy-6-methoxy-2-(2,4,5-trihydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-one; (1)
N-acetyl-L-2-aminoadipate(2-); (1)
VI2Fuc-nLc6; (1)
3',5'-Diiodo-L-thyronine 4'-O-sulfate; (1)
TG(22:1(13Z)/19:2n6/22:6(4Z,7Z,10Z,13Z,16Z,19Z)); (1)
TG(15:0/22:2(13Z,16Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)); TG(15:0/22:4(7Z,10Z,13Z,16Z)/22:4(7Z,10Z,13Z,16Z)); TG(15:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:2(13Z,16Z)); TG(22:2(13Z,16Z)/15:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)); TG(22:4(7Z,10Z,13Z,16Z)/15:0/22:4(7Z,10Z,13Z,16Z)); (1)
TG(14:0/15:0/24:0); TG(14:0/24:0/15:0); TG(15:0/14:0/24:0); TG(15:0/16:0/22:0); TG(15:0/18:0/20:0); (1)
Shoyuflavone C; (1)
4-Hydroxycinnamoylagmatine; (1)
Tipranavir; (1)
N-Acetyltryptophan; Methylphenobarbital; Nigellicine; cyclic 6-Hydroxymelatonin; (1)
Sialyllacto-N-tetraose a; Sialyllacto-N-neotetraose c; Sialyllacto-N-tetraose b; LS tetrasaccharide d; Sialyllacto-N-tetraose c; (1)
Ganglioside GD3 (d18:1/12:0); (1)
L-Tryptophan; D-Tryptophan; 3-Hydroxymethylantipyrine; Ethotoin; (Â±)-Tryptophan; (1)
Vinylacetylglycine; Trimethadione; 5-ethyl-5-methyl-2,4-oxazolidinedione; 6-Oxopiperidine-2-carboxylic acid; (1)
Glutamyltryptophan; Tryptophyl-Glutamate; gamma-Glutamyltryptophan; (1)
Norlaudanosoline; Pipermethystine; noroxymorphone; (1)
Ethyl 2-mercaptopropionate; Methyl 3-mercaptobutanoate; Methyl 3-(methylthio)propanoate; Ethyl 2-(methylthio)acetate; Ethyl 3-mercaptopropanoic acid; (1)
Olmesartan; (1)
De-O-methylsterigmatocystin; Aurantricholide B; {3-[2-(3,5-dihydroxyphenyl)ethyl]phenyl}oxidanesulfonic acid; Dihydroresveratrol 3-sulfate; Dihydroresveratrol 4'-sulfate; (1)
1-Isothiocyanato-8-(methylthio)octane; (1)
PA(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/24:1(15Z)); PA(24:1(15Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)); (1)
Zizybeoside I; Armillaricin; Benzyl gentiobioside; 15beta-hydroxycyproterone acetate; (1)
6,8-bis[2-(3,4-dihydroxyphenyl)-3,7-dihydroxy-3,4-dihydro-2H-1-benzopyran-4-yl]-2-(3-hydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-3,5,7-triol; 8-[3,7-dihydroxy-2-(3-hydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-yl]-2-(3,4-dihydroxyphenyl)-6-[2-(3,4-dihydroxyphenyl)-3,7-dihydroxy-3,4-dihydro-2H-1-benzopyran-4-yl]-3,4-dihydro-2H-1-benzopyran-3,5,7-triol; 6-[3,7-dihydroxy-2-(3-hydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-yl]-2-(3,4-dihydroxyphenyl)-8-[2-(3,4-dihydroxyphenyl)-3,7-dihydroxy-3,4-dihydro-2H-1-benzopyran-4-yl]-3,4-dihydro-2H-1-benzopyran-3,5,7-triol; (1)
Simmondsin 2'-ferulate; Astin I; 4-Hydroxytamoxifen-N-glucuronide; 6-{[1-(2-{[3-(3,4-dimethoxyphenyl)-1-hydroxypropylidene]amino}ethyl)-3-methoxy-4-oxocyclohexa-2,5-dien-1-yl]oxy}-3,4,5-trihydroxyoxane-2-carboxylic acid; 6-{[1-(2-{[2-(3,4-dimethoxyphenyl)ethyl]-C-hydroxycarbonimidoyl}ethyl)-3-methoxy-4-oxocyclohexa-2,5-dien-1-yl]oxy}-3,4,5-trihydroxyoxane-2-carboxylic acid; (1)
Indolelactic acid; 5-Methoxyindoleacetate; Cinnamoylglycine; Edulitine; Methyl 1-methoxy-1H-indole-3-carboxylate; (1)
P-Cresol glucuronide; 2-O-Benzoyl-D-glucose; D-Vacciniin; (1)
(Â±)-Ribaline; 5-Amino-6-(4-hydroxy-2-butenoyl)-2,2-dimethyl-4-chromanone; (1)
CD 1790; (1)
Tetraphyllin B; (1)

IsPrivate

False (1)

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2026 (60)
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2013 (3)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (398)
RNA-seq of coding RNA (175)
RNA-seq of coding RNA from single cells (84)
ChIP-seq (17)
Transcription profiling by tiling array (14)
Methylation profiling by high throughput sequencing (10)
Other (9)
Methylation profiling by array (9)
Animal - High-throughput sequencing (8)
Comparative genomic hybridization by array (8)
ATAC-seq (7)
Unknown experiment type (6)
ChIP-chip by tiling array (6)
Differential (4)
Human - High-throughput sequencing (4)
Proteomic profiling by array (4)
RNA-seq of total RNA (4)
RNA-seq of non coding RNA (4)
Cell line - Single-cell sequencing (3)
Animal - Single-cell sequencing (3)
Single nucleus RNA sequencing (3)
Baseline (2)
Cell line - High-throughput sequencing (2)
Transcription profiling by RT-PCR (2)
ScATAC-seq (2)
CUT&RUN (2)
Animal - One-color microarray (1)
Human - Single-cell sequencing (1)
Cell line - One-color microarray (1)
Genotyping by array (1)

Release Date

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2014 (199)
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2007 (39)
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2006 (18)
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2005 (11)
2003 (8)
2002 (6)
2001 (5)
1998 (2)
2000 (1)
1999 (1)
1997 (1)

Lab affiliation

Department of Cell Biology, Harvard Medical School, Boston MA 02115 (2)
Department of Neuro- and Sensory Physiology University Medical Center Göttingen Humboldtallee 23 37073 Göttingen (2)
Centre for Discovery Brain Sciences, University of Edinburgh, UK; Simons Initiative for the Developing Brain, University of Edinburgh, UK (1)
Core Unit Proteomics, Berlin Institute of Health at Charite-Universitaetsmedizin Berlin and Max Delbrueck Center for Molecular Medicine, Berlin, Germany (1)
Department of Biochemistry, and Department of Cardiology of Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310058, China. (1)
Department of Biology, Stanford University, Stanford, CA, 94305 (1)
Department of Neurobiology, Harvard Medical School; Boston, USA. (1)
Immunobiology of Infection Unit,Institut Pasteur, 75015 Paris, France (1)
Institute of Clinical Pharmacology, Goethe-University, Frankfurt am Main, Germany (1)
Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), Spatial Proteomics Group, Berlin, Germany (lab head) (1)
Max-Planck-Institute for Biology of Ageing Department of Mitochondrial Proteostasis Joseph-Stelzmann-Str. 9b 50931 Cologne Germany (1)
Medizinisches Proteom-Center, Ruhr-Universität Bochum, ZKF 1.055, Universitätsstraße 150, 44801 Bochum, Germany (1)
Physiology & Pharmacology, Cumming School of Medicine, University of calgary, Cagary (1)
Population Health Sciences, Virginia Maryland College of Veterinary Medicine, Virginia Polytechnic Institute & State University (1)
Primary Investigator, Assistant Professor, Division of Biosciences, College of Dentistry, Ohio State University (1)
University (1)
University of Edinburgh (1)
University of Piemonte Orientale (1)
University of Vienna (1)
Wellcome Trust Sanger Institute (1)

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A human iPSC-derived sensory neuron platform for high-throughput discovery of neuroprotectants against chemotherapy-induced peripheral neuropathy

Chemotherapy-induced peripheral neuropathy (CIPN) is a major dose-limiting side effect of cancer treatment, yet the lack of predictive human models has hindered therapeutic progress. We have established a scalable model of paclitaxel-induced axon degeneration and neurotoxicity in iPSC-derived sensor...

ORGANISM(S): Homo sapiens (Human)

2026-04-03 | PXD074954 | Pride

Transcription profiling of mouse spinal and trigeminal sensory ganglia of Brn3a knockout and wild type mice reveals conserved and distinct regulatory targets of Brn3a at different levels of the sensory axis

General somatic sensation is conveyed to the central nervous system at cranial levels by the trigeminal ganglion (TG), and at spinal levels by the dorsal root ganglia (DRG). Although these ganglia have similar functions, they have distinct embryological origins, in that both contain neurons origina...

ORGANISM(S): Mus musculus

2008-06-14 | E-GEOD-5658 | biostudies-arrayexpress

Sequencing of methylated GATC DNA fragments (Targeted DamID) from seven olfactory neuron populations in Drosophila melanogaster

This project’s aim was to compare the transcriptional profiles of olfactory sensory neurons in Drosophila melanogaster in order to identify novel genes that specify neuron-specific functions/phenotypes or may otherwise be involved in the development of the olfactory system. The isolation of suffic...

ORGANISM(S): Drosophila melanogaster

2021-03-17 | E-MTAB-8935 | biostudies-arrayexpress

Expression data from FACS purified nociceptor neurons from peripheral sensory ganglia

The goal of this study was to analyze global gene expression in specific populations of nociceptor sensory neurons, the neurons that detect damaging/noxious stimuli. The dorsal root ganglia (DRG), trigeminal ganglia, and nodose ganglia are anatomically distinct peripheral sensory ganglia that contai...

ORGANISM(S): Mus musculus

2013-08-28 | E-GEOD-46546 | biostudies-arrayexpress

Mapping regulatory variation in sensory neurons using IPS lines from the HIPSCI project

Sensory neurons are nerve cells that are activated by sensory input such as heat, light and convey information to the brain. Although a key cell type in complex organisms, human sensory neurons are challenging to study because they are impossible to obtain from living donors. We have collaborated wi...

EGAS00001001149 | EGA

Derivation of sensory neurons from iPSCs.

Characterization of the gene expression changes accompanying the differentiation of hPSC-sensory from embryonic stem cells through to neuronal precursor cells. We also compare the time course gene expression profile to that of the relevant primary human tissue, human dorsal root ganglia (hDRG). A re...

ORGANISM(S): Homo sapiens

2014-10-22 | E-MTAB-3031 | biostudies-arrayexpress

Transcription profiling of olfactory epithelia isolated from wild type and KLF7 null mice to identify potential KLF7 target genes in olfactory sensory neurons.

KLF7 null mice show profound axonal growth defects in the olfactory epithelium. The goal of this study was the identification of potential KLF7 target genes in olfactory sensory neurons. Experiment Overall Design: Olfactory epithelia were isolated from 3 wildtype and 3 mutant 1 day old pups and the ...

ORGANISM(S): Mus musculus

2007-12-01 | E-GEOD-3595 | biostudies-arrayexpress

Gene expression in cellular compartments of Aplysia sensory neurons

Whole genome transcriptional profiling is used to compare ESTs found in cell bodies and processes of Aplysia sensory neurons RNA samples derived from cell bodies or processes of Aplysia single cultured sensory neurons were hybridized to custom Aplysia EST microarrays. Two-condition experiment; four ...

ORGANISM(S): Aplysia californica

2013-04-26 | E-GEOD-30388 | biostudies-arrayexpress

Whole transcriptome analysis of FACS purified somatosensory neuron subtypes and whole dorsal root ganglia tissue

The goal of this study was to analyze global gene expression in specific populations of somatosensory neurons in the periphery, including major, non-overlapping populations that include nociceptors, pruriceptors, and prorioceptors. The mammalian somatosensory nervous system encodes the perception of...

ORGANISM(S): Mus musculus

2014-12-23 | E-GEOD-55114 | biostudies-arrayexpress

The microRNA miR-124 controls gene expression in the sensory nervous system of Caenorhabditis elegans

We generated animals carrying a genomically integrated mir-124 promoter::gfp transgene and identified mir-124 promoter::GFP labelled cells as a subset of the C. elegans sensory neurons. We used fluorescence activated cell sorting (FACS) to isolate four distinct cell populations: mir-124 expressing (...

ORGANISM(S): Caenorhabditis elegans

2010-03-22 | E-GEOD-16050 | biostudies-arrayexpress

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